View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226-Insertion-10 (Length: 880)

Name: NF3226-Insertion-10
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226-Insertion-10
NF3226-Insertion-10
[»] chr5 (13 HSPs)
chr5 (638-868)||(38273482-38273714)
chr5 (385-639)||(38273216-38273451)
chr5 (7-143)||(38272437-38272573)
chr5 (85-301)||(38278362-38278556)
chr5 (268-361)||(38272617-38272713)
chr5 (644-768)||(38271805-38271929)
chr5 (389-480)||(38271480-38271571)
chr5 (671-768)||(38270557-38270654)
chr5 (357-481)||(38274623-38274746)
chr5 (642-766)||(38278015-38278143)
chr5 (391-460)||(38262967-38263036)
chr5 (361-428)||(38276288-38276354)
chr5 (406-482)||(38271666-38271741)
[»] chr7 (1 HSPs)
chr7 (638-729)||(10593073-10593165)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 638 - 868
Target Start/End: Original strand, 38273482 - 38273714
Alignment:
Q  638 ttcgtataattggtttcattttattcaatacaaatgattttggtgatgtttgaggcaaatttcatgacagaacgtgactactatatcatgttctatttag 737  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38273482 ttcgtataattggtttcattttattcaatacaaatgattttggtgatgtttgaggcaaatttcatgacagaacgtgactactatatcatgttcgatttag 38273581  T
Q  738 gaaagttctacatcgaacaccatacaacaaagtttatatttgtttgaaatgtgaattacaaatggaaggaaaagttggaaggatatagattcacgatctt 837  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38273582 gaaagttctacatcgaacaccatacaacaaagtttatatttgtttgaaatgtgaattacaaatggaaggaaaagttggaaggatatagattcacgatctt 38273681  T
Q  838 acttctc-atttat-atcttgtaacataatttc 868  Q
    ||||||| |||||| ||||||||||||||||||    
T  38273682 acttctcaatttataatcttgtaacataatttc 38273714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 385 - 639
Target Start/End: Original strand, 38273216 - 38273451
Alignment:
Q  385 aaagatgattaacttccaaaacaactgaaattaagtaggtcttattagcatttttaaattgcagggttggaatagacttaatcttagttactatgattca 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||    
T  38273216 aaagatgattaacttccaaaacaactgaaattaagtaggtcttattagcatttttaaattg-------------------atcttagttactatgattca 38273296  T
Q  485 gttaaggaatagttaatgtgctgcgtagagaaatttcttaagacaaagccttccgtagttccttcccctcccaatcccgactagtttcttaagacgtagt 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38273297 gttaaggaatagttaatgtgctgcgtagagaaatttcttaagacaaagccttccgtagttccttcccttcccaatcccgactagtttcttaagacgtagt 38273396  T
Q  585 aaagtacttatacgtataattggctttttattttgtcatgtatctttaattattt 639  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38273397 aaagtacttatacgtataattggctttttattttgtcatgtatctttaattattt 38273451  T

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Target: chr5; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 38272437 - 38272573
Alignment:
Q  7 actacttatttgtacaacaatctcaagctaggtgcaaaagttgttggtgtttgtgaccttgtgccagagatgtttgggacaacctcttcaagtgattaag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38272437 actacttatttgtacaacaatctcaagctaggtgcaaaagttgttggtgtttgtgaccttgtgccagagatgtttaggacaacctcttcaagtgattaag 38272536  T
Q  107 aaattacaacttgagaaaatgtgaaacaattgtctcc 143  Q
    |||||||||||||||||||||||||||||||||||||    
T  38272537 aaattacaacttgagaaaatgtgaaacaattgtctcc 38272573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 85 - 301
Target Start/End: Original strand, 38278362 - 38278556
Alignment:
Q  85 acaacctcttcaagtgattaagaaattacaacttgagaaaatgtgaaacaattgtctcctaaaacttatgttaagtagttcaagtgaacttcnnnnnnng 184  Q
    ||||||||||||||||| |||||||| | || |||||||||||| ||||||||||| ||||||||||||||||||||||| |                 |    
T  38278362 acaacctcttcaagtgaataagaaataagaatttgagaaaatgtaaaacaattgtcacctaaaacttatgttaagtagttta----------------tg 38278445  T
Q  185 tgaatttgtgaacctattgaaatcattaagaacatgagaatatgtaattccatcactaacactataacatgctacagtgttgcagttttgttcattttaa 284  Q
    |||| ||||||||||||||      |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38278446 tgaaattgtgaacctattg------ttaagaacttgaaaatatttaattccatcactaacactataacatgctacagtgttgcagttttgttcattttaa 38278539  T

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Target: chr5; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 38272617 - 38272713
Alignment:
Q  268 agttttgttcattttaagattgtggattcaaaattgacattctgtagtttatgtgaaccta---ttaaattccctctgcgagagttcaaacaagtaa 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||    
T  38272617 agttttgttcattttaagattgtggattcaaaattgacattctgtagtttatgtgaacctattcttcaattccctctgcgagagttcaaacaagtaa 38272713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 644 - 768
Target Start/End: Original strand, 38271805 - 38271929
Alignment:
Q  644 taattggtttcattttattcaatacaaatgattttggtgatgtttgaggcaaatttcatgacagaacgtgactactatatcatgttctatttaggaaagt 743  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||  |||||| |||||    
T  38271805 taattggttttattttattcaatacaaatgattttgatgatgtttgagacaaatttcatgacagaaagtgactcctatatcatgttggatttagtaaagt 38271904  T
Q  744 tctacatcgaacaccatacaacaaa 768  Q
     | ||||| ||||| ||| ||||||    
T  38271905 cccacatccaacacaatagaacaaa 38271929  T

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Target: chr5; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 389 - 480
Target Start/End: Original strand, 38271480 - 38271571
Alignment:
Q  389 atgattaacttccaaaacaactgaaattaagtaggtcttattagcatttttaaattgcagggttggaatagacttaatcttagttactatga 480  Q
    ||||||||||||| |||||||||||||||||||||||| || |||||||||||| || |||||||||||||| ||||||||| |||||||||    
T  38271480 atgattaacttcccaaacaactgaaattaagtaggtctgataagcatttttaaactgaagggttggaatagagttaatcttatttactatga 38271571  T

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Target: chr5; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 671 - 768
Target Start/End: Original strand, 38270557 - 38270654
Alignment:
Q  671 atgattttggtgatgtttgaggcaaatttcatgacagaacgtgactactatatcatgttctatttaggaaagttctacatcgaacaccatacaacaaa 768  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||| ||||| | || |||||||| ||||||||||    
T  38270557 atgattttgatgatgtttgagacaaatttcatgacagaaagtgactactatatcatgttggatttagtaaagtcccacttcgaacacaatacaacaaa 38270654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 357 - 481
Target Start/End: Original strand, 38274623 - 38274746
Alignment:
Q  357 agtaatattaaggaatctagttcttcagaaagatgattaacttccaaaacaactgaaattaagtaggtcttattagcatttttaaattgcagggttggaa 456  Q
    |||||||||| |||||||||||||| | |||| |||||||||||||||||||||||||||||| |||| || ||||||  |||||| ||| || ||| ||    
T  38274623 agtaatattagggaatctagttcttga-aaaggtgattaacttccaaaacaactgaaattaagaaggttttgttagcacgtttaaactgcgggattgtaa 38274721  T
Q  457 tagacttaatcttagttactatgat 481  Q
    | |||||||||| |||||| |||||    
T  38274722 tcgacttaatctaagttacaatgat 38274746  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 642 - 766
Target Start/End: Original strand, 38278015 - 38278143
Alignment:
Q  642 tataattggtttcattttattcaata--caaatgattttggtgatgtttgaggcaaatttcatgacagaacgtgactac--tatatcatgttctatttag 737  Q
    ||||||| ||||||||||||||||||  |||||||||||| ||| ||||||| ||||||||||| | ||| || |||||  |||||||||||| |||||     
T  38278015 tataatttgtttcattttattcaatatacaaatgattttgatgacgtttgagacaaatttcatgtctgaaagtaactactatatatcatgttcgatttat 38278114  T
Q  738 gaaagttctacatcgaacaccatacaaca 766  Q
     |||||   ||||||| ||| ||||||||    
T  38278115 taaagtctcacatcgatcacaatacaaca 38278143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 391 - 460
Target Start/End: Original strand, 38262967 - 38263036
Alignment:
Q  391 gattaacttccaaaacaactgaaattaagtaggtcttattagcatttttaaattgcagggttggaataga 460  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||||||| || ||| ||| ||||||    
T  38262967 gattaacttccaaagaaactgaaattaagtaggtcttattaggatttttaaagtgaaggattgtaataga 38263036  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 361 - 428
Target Start/End: Original strand, 38276288 - 38276354
Alignment:
Q  361 atattaaggaatctagttcttcagaaagatgattaacttccaaaacaactgaaattaagtaggtctta 428  Q
    |||||| ||| |||||||||| | |||||||||||||||||||| |||||||||| |||||| |||||    
T  38276288 atattagggagtctagttcttga-aaagatgattaacttccaaatcaactgaaataaagtagatctta 38276354  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 406 - 482
Target Start/End: Original strand, 38271666 - 38271741
Alignment:
Q  406 caactgaaattaagtaggtcttattagcatttttaaattgcagggttggaatagacttaatcttagttactatgatt 482  Q
    ||||||||| |||||||| |||  ||||||||||||| ||||||  || ||||||||||| | ||||||||||||||    
T  38271666 caactgaaagtaagtaggccttgctagcatttttaaactgcaggaatgtaatagacttaa-catagttactatgatt 38271741  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 729
Target Start/End: Complemental strand, 10593165 - 10593073
Alignment:
Q  638 ttcgtataattggtttcattttattcaatacaaatga-ttttggtgatgtttgaggcaaatttcatgacagaacgtgactactatatcatgtt 729  Q
    |||||||||||  |||||||||||| ||||||||||| ||||| |||| |||||| | |||||||||||| || || || | |||||||||||    
T  10593165 ttcgtataattaatttcattttattgaatacaaatgatttttgatgatatttgagactaatttcatgacaaaaagttaccattatatcatgtt 10593073  T

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