View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226-Insertion-11 (Length: 612)
Name: NF3226-Insertion-11
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 158 - 372
Target Start/End: Complemental strand, 53940398 - 53940184
Alignment:
| Q |
158 |
cattatatattcaatgatttgtatgatttcccattaactattgacaaacacaaggcttggaattaattcatcatcatgggagattttaatttgatgctca |
257 |
Q |
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| T |
53940398 |
cattatatattcaatgatttgtatggttttccattaactattgacaaacacaaggcttggaattaattcatcatcttgggagattttaatttgatgctca |
53940299 |
T |
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| Q |
258 |
acagagaagaatgaatgtgagaatttggctttagatactctcgtcaacttgtttaaagataattaacaaaagattagtgatattttaacaaccaattgag |
357 |
Q |
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| T |
53940298 |
acagagaagaatgaatgtgagaatttggctttagatactctcgtcaacttgtttaaagataatttacaaaagattagtgatattttaacaactaattgag |
53940199 |
T |
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| Q |
358 |
acaaccttgatgaca |
372 |
Q |
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| T |
53940198 |
acaaccttgatgaca |
53940184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 448 - 608
Target Start/End: Complemental strand, 53940108 - 53939948
Alignment:
| Q |
448 |
ttatcataaagtggttgtataaatataattttttccctttacaaaattataattttagttaccatggttgtattggggtattagagctcacttggatcgt |
547 |
Q |
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| T |
53940108 |
ttatcataaagtggttgtataaatataattttttctctttacaaaattataattttagttaccatggttgtattggggtattagagctcacttggatcgt |
53940009 |
T |
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| Q |
548 |
tgtgaagtgaccctgaatggttgttctgtttcccttcaacctcggtggctaacttaattgg |
608 |
Q |
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| T |
53940008 |
tgtgaagtgaccctgaatggttgttctgtttcccttcaaactcggtggctaacttaattgg |
53939948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 53940898 - 53940765
Alignment:
| Q |
16 |
gtccaagtgcaatctttgaaaacatgatccaaatcttcataagcattcccacaacatgaacaaaaataatcaatcatcctttcgagttagagcaaacctt |
115 |
Q |
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| T |
53940898 |
gtccaagtgcaatctttgaaaacatgatccaaatcttcataagcattcccacaacatgaacaaaaataatcaatcatcctttcgagttagagcaaacctt |
53940799 |
T |
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| Q |
116 |
tcgagttaatttaattcttaccgagacatcatta |
149 |
Q |
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| T |
53940798 |
tcgagttaatttaattcttaccgagacatcatta |
53940765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 39241184 - 39241224
Alignment:
| Q |
322 |
aacaaaagattagtgatattttaacaaccaattgagacaac |
362 |
Q |
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| T |
39241184 |
aacaaaagagtagtgatattttaacaaccatttgagacaac |
39241224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 481
Target Start/End: Original strand, 32510871 - 32510904
Alignment:
| Q |
448 |
ttatcataaagtggttgtataaatataatttttt |
481 |
Q |
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| T |
32510871 |
ttatcataaattggttgtataaatataatttttt |
32510904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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