View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3226-Insertion-13 (Length: 1028)
Name: NF3226-Insertion-13
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-13 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 49 - 637
Target Start/End: Original strand, 36072580 - 36073168
Alignment:
| Q |
49 |
tctgtcttccagtaggtgagaatgatcttgctcatgtttacttgatcacaaagaaagtgctttatggtctctatgtgtgcttgctcctcctatgagcttt |
148 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36072580 |
tctgtcttccaataggtgagaatgatcttgctcatgtttacttgatcacaaagaaagtgctttatggtctctatgtgtgcttgctcctcctatgagcttt |
36072679 |
T |
|
| Q |
149 |
gagattccttacaaggttttcagcaaatttattgtccaccaatagcttaatttgctctcctacacttatcttcattttaagtagcagtgattacaaccgc |
248 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36072680 |
gagattccttacaaggttgtcagcaaatttattgtccaccaatagcttaatttgctctcctacacttatcttcattttaagtagcagtgattacaaccgc |
36072779 |
T |
|
| Q |
249 |
aatgcttgacatgttgtagtgcaagctgatatgaattcaacttcacaagttgatagtgctacagttgtttgtttctttgaattcaaggatatcagtgagt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36072780 |
aatgcttgacatgttgtagtgcaagctgatatgaattcaacttcacaagttgatagtgctacagttgtttgtttctttgaattcaaggatatcagtgagt |
36072879 |
T |
|
| Q |
349 |
tgaaaattttgaacatgtagcctattagcttctttcaattctatctacacaccagtttgagacatggtaaccaattagcttctttccttcatcatttggc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36072880 |
tgaaaattttgaacatgtagcctattagcttctttcaattctatctacacaccagtttgagacatggtaaccaattagcttctttccttcatcatttggc |
36072979 |
T |
|
| Q |
449 |
ttaggatacaccacaccataatcagttgtacctttaaaatacctcatgatcctttttattgcttgcatatatatgtgacaactttggtttttgcatgaat |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36072980 |
ttaggatacaccacaccataatcagttgtacctttaaaatacctcatgatcctttttattgcttgcatatatatgtgacaactttggtttttgcatgaat |
36073079 |
T |
|
| Q |
549 |
ttactcactatttctacactgtgacgtatatcaagtcttgaattgcaagcatatctaagacttccaaccatttgcttataaagaatgtt |
637 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36073080 |
ttactcaccatttctacactgtgacgtatatcaagtcttgaattgcaagcatatctaagacttccaaccatttgcttataaagaatgtt |
36073168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 635 - 1023
Target Start/End: Original strand, 36073212 - 36073604
Alignment:
| Q |
635 |
gtttctataggtgtgcttgatcaactgcaatcaacatattgaatcttttcagtatgtcattgacacattttttatggtgaattaacacactatgttggta |
734 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36073212 |
gtttctataggtgtgcttgatcaattgcaatcaacatattgaatcttttcagtatgtcattgacacattttttatggtgaattaacacactatgttggta |
36073311 |
T |
|
| Q |
735 |
ttggtgaattctaaaccaaggaaatatctcaactttcataatttagtcatatcaaactcagagcttaactgatctttgattctttaaacttcatctaagt |
834 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36073312 |
ttggtgaattctaaaccaaggaaatatctcaattttcataatttagtcatatcaaactcagagcttaactgatctttgattctttaaacttcatctaagt |
36073411 |
T |
|
| Q |
835 |
tgtttctagttatcagtaaatcatcaacatacaagcaaattatgttaatgttgttctgatttgtgcctt-caacatagattccatgctcaactgtgcatt |
933 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
36073412 |
tgtttctagttatcagtaaatcatcaacatataagcaaattatgttaatgttgttctgatttgtgccttccaacatagattccatgctcaactgtgcatt |
36073511 |
T |
|
| Q |
934 |
ttgagtagctattttgcttgag-aaatcatatgttcttatattccaggctatt-gtgcttgctttaagccatacc-agctttgttcagtttcg |
1023 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
36073512 |
ttgagtagctattttgcttgagaaaatcatatgttcttatattccaggctcttggtgcttgctttaagccataccaagctttgttcagtttcg |
36073604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 9e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 665 - 959
Target Start/End: Original strand, 12447936 - 12448236
Alignment:
| Q |
665 |
tcaacatattgaatcttttcagtatgtcattgacacattttttatggtgaattaacacac-tatgttggtattggtgaattctaaaccaaggaaatatct |
763 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| || |||||| ||| ||||| | | |||| || |||||||||||||||||||||||| | |
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|
| T |
12447936 |
tcaacatattgaatctttttgatatgtcattgatgtatttcttttggtgagttaccacacctctactggtgttagtgaattctaaaccaaggaaatattt |
12448035 |
T |
|
| Q |
764 |
caactttcataatttagtcatatca-----aactcagagcttaactgatctttgattctttaaacttcatctaagttgtttctagttatcagtaaatcat |
858 |
Q |
| |
|
||| || ||| |||||||||||| || ||||||||||||||| ||||| |||||| ||||||||||||| ||||| || |||||| ||||||| |
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|
| T |
12448036 |
caatcctcctaaattagtcatatcatatcaaattcagagcttaactgacctttgtttctttcaacttcatctaagctgttttaagctatcagcaaatcat |
12448135 |
T |
|
| Q |
859 |
caacatacaagcaaattatgttaatgttgttctgatttgtgccttcaacatagattccatgctcaactgtgcattttgagtagctattttgcttgagaaa |
958 |
Q |
| |
|
||||||| | ||||| ||||| ||||||||||| ||| || |||| ||||| ||| ||||||||| |||||||| |||||||| ||||| ||||||||| |
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|
| T |
12448136 |
caacatataggcaaactatgtcaatgttgttcttattggtacctttgacataaatttcatgctcaattgtgcattctgagtagccatttttcttgagaaa |
12448235 |
T |
|
| Q |
959 |
t |
959 |
Q |
| |
|
| |
|
|
| T |
12448236 |
t |
12448236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 175 - 367
Target Start/End: Original strand, 12447467 - 12447659
Alignment:
| Q |
175 |
atttattgtccaccaatagcttaatttgctctcctacacttatcttcattttaagtagcagtgattacaaccgcaatgcttgacatgttgtagtgcaagc |
274 |
Q |
| |
|
|||| ||||||||||| | || ||| || ||||||| | ||||||||||| | |||||||||||| |||| |||| |||||||| || | ||||| | |
|
|
| T |
12447467 |
atttgttgtccaccaacatctcaatctgttctcctaagcctatcttcatttcatgtagcagtgattgtaaccacaatacttgacatactgcattgcaaac |
12447566 |
T |
|
| Q |
275 |
tgatatgaattcaacttcacaagttgatagtgctacagttgtttgtttctttgaattcaaggatatcagtgagttgaaaattttgaacatgta |
367 |
Q |
| |
|
||||||| || | ||||||||||||| ||||||| | |||| |||||||||||| || | || || || ||||||||||| |||| ||||| |
|
|
| T |
12447567 |
tgatatgtatatagcttcacaagttgacagtgctagaattgtatgtttctttgaactctatgagattggttagttgaaaattctgaaaatgta |
12447659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 568 - 625
Target Start/End: Original strand, 12447793 - 12447850
Alignment:
| Q |
568 |
tgtgacgtatatcaagtcttgaattgcaagcatatctaagacttccaaccatttgctt |
625 |
Q |
| |
|
|||||| || |||| || |||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
12447793 |
tgtgacataaatcaggtattgaattgcaaggatatctgagacttccaaccatttgctt |
12447850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 12447368 - 12447416
Alignment:
| Q |
59 |
agtaggtgagaatgatcttgctcatgtttacttgatcacaaagaaagtg |
107 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||||||| ||||||||| |
|
|
| T |
12447368 |
agtaggtgagaatgatcttgttcttatttacttgatcacgaagaaagtg |
12447416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 8e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 53 - 366
Target Start/End: Original strand, 12695851 - 12696164
Alignment:
| Q |
53 |
tcttccagtaggtgagaatgatctt--gctcatgtttacttgatcacaaagaaagtgctttatggtctctatgtgtgcttgctcctcctatgagctttga |
150 |
Q |
| |
|
|||| ||||| ||||||| |||||| |||| | ||||||||||||| ||||||||| | | || ||||| | ||||||||||||| ||||||| || |
|
|
| T |
12695851 |
tcttgcagtaagtgagaaagatcttttgctcttatttacttgatcacgaagaaagtggtattcgg--tctatatctgcttgctcctcccatgagctatgg |
12695948 |
T |
|
| Q |
151 |
gattccttacaaggttttcagcaaatttattgtccaccaatagcttaatttgctctcctacacttatcttcattttaagtagcagtgattacaaccgcaa |
250 |
Q |
| |
|
||| |||| ||| ||| ||| ||||||| |||||||| | || |||||| |||||||||| ||||||||||| |||||| ||| ||| |||| || |
|
|
| T |
12695949 |
gatcccttgcaacgttgatagcgtatttattttccaccaacaactcaatttgttctcctacacctatcttcatttcaagtagaagttattgtaaccataa |
12696048 |
T |
|
| Q |
251 |
tgcttgacatgttgtagtgcaagctgatatgaattcaacttcacaagttgatagtgctacagttgtttgtttctttgaattcaaggatatcagtgagttg |
350 |
Q |
| |
|
| ||| ||||||| | |||||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||||| || ||| | |||||||| |
|
|
| T |
12696049 |
tccttatcatgttgcattgcaaggcgatatgtattcaacttcacaagttgacagtgctacaactgtttgtttctttgaactccgggagaatggtgagttg |
12696148 |
T |
|
| Q |
351 |
aaaattttgaacatgt |
366 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
12696149 |
aaaattttgaacatgt |
12696164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 487 - 637
Target Start/End: Original strand, 12696452 - 12696598
Alignment:
| Q |
487 |
atacctcatgatcctttttattgcttgcatatatatgtgacaactttggtttttgcatgaatttactcactatttctacactgtgacgtatatcaagtct |
586 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||||| |||| |||||||||||||| | ||||| | | ||||| || ||| ||||||| |||| |
|
|
| T |
12696452 |
atacctcatgatcctttttacttcttg----aatatgtgacagcttttgtttttgcatgaatcttctcaccactcctacaatgcgacatatatcaggtct |
12696547 |
T |
|
| Q |
587 |
tgaattgcaagcatatctaagacttccaaccatttgcttataaagaatgtt |
637 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||| || |||||| |||| |
|
|
| T |
12696548 |
tgaatttcaagcatatatgagacttccaaccatttgtttgtaaagagtgtt |
12696598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 852 - 958
Target Start/End: Complemental strand, 6362966 - 6362860
Alignment:
| Q |
852 |
aaatcatcaacatacaagcaaattatgttaatgttgttctgatttgtgccttcaacatagattccatgctcaactgtgcattttgagtagctattttgct |
951 |
Q |
| |
|
||||||| ||| || ||||||| |||||| | ||||||||||| | |||| |||||||||||||||||||||||||||| |||||||| ||||| || |
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|
| T |
6362966 |
aaatcattaacttataagcaaactatgttgacattgttctgattggcacctttgacatagattccatgctcaactgtgcattatgagtagccattttcct |
6362867 |
T |
|
| Q |
952 |
tgagaaa |
958 |
Q |
| |
|
||||||| |
|
|
| T |
6362866 |
tgagaaa |
6362860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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