View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226-Insertion-17 (Length: 371)
Name: NF3226-Insertion-17
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-17 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 57 - 371
Target Start/End: Complemental strand, 27325857 - 27325545
Alignment:
| Q |
57 |
aaagcgtgaaaaagagacgggtgatattccaaagtcaattcaatgctgcatgagcgaaactggagcttctgaagtacaggcttgtgagtatgttaagtcc |
156 |
Q |
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| T |
27325857 |
aaagcgtgaaaacgagacaggtgatattccaaagtcaattcaatgttacatgaacgaaactggagcttctgaagtagaggcttgtgagtatgttaagtcc |
27325758 |
T |
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| Q |
157 |
atgatgtttatagagtggaagaagatgaataaagaagctcatggttcatctttctctcaatgtttcatagatacagctgtaaatcttgctagaatggcat |
256 |
Q |
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| T |
27325757 |
atgatgtttatagagtggaagaagatgaataaagaagctcatggttcatctttctctcaatgtttcatagatacagctgtaaatcttgctagaatggcat |
27325658 |
T |
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| Q |
257 |
tgtttatgtatcatcatggagatggccatactattcaagctcctgaaattaagaatcgcataatatcgttagtttttcagcctatattcctatgatatgt |
356 |
Q |
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| T |
27325657 |
tgtttatgtatcatcatggagatggccatactattcaagctcctgaaattaagaatcgcataacatcgttagtttttcagcc--tattcctaatatattt |
27325560 |
T |
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| Q |
357 |
actaaacattaatag |
371 |
Q |
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| T |
27325559 |
actaaacattaatag |
27325545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 99 - 320
Target Start/End: Complemental strand, 27443591 - 27443370
Alignment:
| Q |
99 |
atgctgcatgagcgaaactggagcttctgaagtacaggcttgtgagtatgttaagtccatgatgtttatagagtggaagaagatgaataaagaagctcat |
198 |
Q |
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| T |
27443591 |
atgctacatgaacgaaactggagcttctgaagttgaagctcatgagtatgtaaagtccatgatacatgcagagtggaagaagatgaataaagaagctcat |
27443492 |
T |
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| Q |
199 |
ggttcatctttctctcaatgtttcatagatacagctgtaaatcttgctagaatggcattgtttatgtatcatcatggagatggccatactattcaagctc |
298 |
Q |
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| T |
27443491 |
agttcatctttctctcatagcttcatagatattgctataaattatggtagagtggcaatgttcatgtaccaacatggagacggccataccattcaagata |
27443392 |
T |
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| Q |
299 |
ctgaaattaagaatcgcataat |
320 |
Q |
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| T |
27443391 |
ctgaaatgcaaaatcgcataat |
27443370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 27406275 - 27406148
Alignment:
| Q |
168 |
agagtggaagaagatgaataaagaagctcatggttcatctttctctcaatgtttcatagatacagctgtaaatcttgctagaatggcattgtttatgtat |
267 |
Q |
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| T |
27406275 |
agagtggaagaagatgaatatagaagttcatagttcatctttctctcaaagtttcatagatattgctataaattatgatagagtggcaatgttcatgtac |
27406176 |
T |
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| Q |
268 |
catcatggagatggccatactattcaag |
295 |
Q |
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| T |
27406175 |
caacatggagacggccattccattcaag |
27406148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 18845416 - 18845590
Alignment:
| Q |
57 |
aaagcgtgaaaaagagacgggtgatattccaaagtcaattcaatgctgcatgagcgaaactggagcttctgaagtacaggcttgtgagtatgttaagtcc |
156 |
Q |
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|||||| ||||| ||||| |||||||||||||||| || | |||||| ||||| ||||||||||||||||||| | ||||| | || ||| | |||||| |
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| T |
18845416 |
aaagcgggaaaatgagacaggtgatattccaaagttaaataaatgctacatgaacgaaactggagcttctgaaattgaggctagggattatatgaagtcc |
18845515 |
T |
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| Q |
157 |
atgatgtttatagagtggaagaagatgaataaagaagctcatggttcatctttctctcaatgtttcatagataca |
231 |
Q |
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| T |
18845516 |
atgatgtctacattatggaagaagatgaataaagaagctcaaagttcatctttctctcaaaatttcatagataca |
18845590 |
T |
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