View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226-Insertion-19 (Length: 580)
Name: NF3226-Insertion-19
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 580
Target Start/End: Original strand, 12156870 - 12157450
Alignment:
| Q |
9 |
aacgatccttcagtgtgttattgtccaaattgacgaagtccttctctttt--gctatatttgatacatgggtaataatcttatgatgtaattaacatgag |
106 |
Q |
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| T |
12156870 |
aacgatcctacagtgtgttattgtccaaattgacgaagtcctttttttttttgctatatctgatacatgggtaataatcttatgatgtaattaatatgag |
12156969 |
T |
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| Q |
107 |
tcccatcgttgattg-agcaatatagttaacaaaactgacttggtcaaaaacaaattaaggcgtgtgagacaagaaatgtacatcaatgacctccaagtc |
205 |
Q |
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| T |
12156970 |
tcccaccgttgattggagcaatatagttaacaaaactgacttggtaaaaaacaaattaaggcatgtgagacaagaaatgtacatcaatgaccttcaagtt |
12157069 |
T |
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| Q |
206 |
gctataattcaaaagctcactagctagccacctgttgaaactacctctcacttgaa---actac-atcaatgacctatcacttactttgacataaatcct |
301 |
Q |
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| T |
12157070 |
ggtataattcaaaagctcactagctagtcagctgttgaaactacctctcacttggactcacgactatcttgcacctatcacttactttgacataaatcct |
12157169 |
T |
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| Q |
302 |
aataacaacaacaacaaccaaatggtttattatataaca---gcgagaaaaacaaaccccacacacatgtacacatcacttactttggcataatcctaat |
398 |
Q |
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| T |
12157170 |
aataacaacaacaacaaccaaataatttgctatataacaacagcgagaaaaacaaaccccacacacatgtacacataacttactttggcataatcctaat |
12157269 |
T |
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| Q |
399 |
aacaacaacaactagatgatttgttatataataacaatggaaaaacaaaccacacacacgtacgtaaattaagctcttaatcaaactatatatttataga |
498 |
Q |
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| T |
12157270 |
aacaacaacaaccaaatgatttgttatctaataacaatggaaaaacaaaccacgcacacgtacgtaaattaatctcttaatcaaactatatatttataga |
12157369 |
T |
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| Q |
499 |
aatgaacgttgattgcttctgaacaaattttaggaagagatcagcataatatgtgaacgatgtaataggaatcgtggttcca |
580 |
Q |
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| T |
12157370 |
aatgaacattgattgcttctgaacagattttaggaaaagattggcat-atatgtgaacgatgtaataggaatcttggttcca |
12157450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 9875262 - 9875370
Alignment:
| Q |
89 |
tgatgtaattaacatgagtcccatcgttgattg-agcaatatagttaacaaaactgacttggtcaa-aaacaaattaaggcgtgtgagacaagaaatgta |
186 |
Q |
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| T |
9875262 |
tgatgtaatcaacatgagtcccacccttgattgtagcaatggagttaacaaagctgacctggtgaagaaaaaaattaaggtgtgtaagacaagaaataaa |
9875361 |
T |
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| Q |
187 |
catcaatga |
195 |
Q |
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| T |
9875362 |
catcaatga |
9875370 |
T |
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