View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3226-Insertion-2 (Length: 602)
Name: NF3226-Insertion-2
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 571
Target Start/End: Original strand, 39635271 - 39635819
Alignment:
| Q |
11 |
tctacgtatgagcgtcttcgtggtgaaaatctttacatgtcactttgagcggtaaaattcgttctccgtaggatttatgtgcagcatctagaagataa-t |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| | |
|
|
| T |
39635271 |
tctacgtatgagcgtcttcgtggtgaaa-tctttacatgtcactttgagcggtaaaattctttctccggaggatttaagtgcagcatctagaagataaat |
39635369 |
T |
|
| Q |
110 |
aaggggtatttggactagtttggctctccaaaaaatacaaattttctcttggcaattaatttttggtagacttccgactcgctcaactttatcacataaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
39635370 |
aaggggtatttggactagtttggctctccaaaaaatccaaattttctcttggcaattaatttttggtagacttctgactcgctcaaacttatcacataaa |
39635469 |
T |
|
| Q |
210 |
gggagctttgccgggttggtgtcactttcgaattttgtgtggtgccttgggtattcaaagaggtagatgatcatttgttttgttgatatagcttttgttg |
309 |
Q |
| |
|
|| ||||| ||||| |||||||||||| || ||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
39635470 |
gg-agcttagccgg-ttggtgtcacttc--aaatttgtgtggtgccttgg-tattcaa-gaggtagatgataatttgttttgttgatatagcttt-gttg |
39635562 |
T |
|
| Q |
310 |
aaaaagatttgatatgcaaattttttaaaatggatctggaacgagggtgatttttccaaatttataggataatctatctactaaagttcgatgtttaaga |
409 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39635563 |
aaaa-gatttgatatgcaattttt---aaatggatc-ggaacgagggtgatttttccaaaat-ataggataatctatctactaaagttcgatgtt-aaga |
39635655 |
T |
|
| Q |
410 |
acaagaaacacaaacattgccccgtgggcagacgctcgtaccttttcatatcactgtttcaaatttgaatcctagtgcaagcagaaaattgcatcccttc |
509 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39635656 |
acaagaaacacaaacattgccctgtgggcagacgctcgtaccttttcatatcactgtttcaaatttgaatcctagtgcaagcagaaaattgcatcccttc |
39635755 |
T |
|
| Q |
510 |
gttaaactcaaa-ggacacacccactgggccgac-aaagattgtgttacttgttatatcaatac |
571 |
Q |
| |
|
||||||| |||| |||||||||||||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
39635756 |
gttaaacccaaagggacacacccactgggccaacaaaagattgcgttacttgttatatcaatac |
39635819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 34786553 - 34786631
Alignment:
| Q |
117 |
atttggactagtttggctctccaaaaaatacaaattttctcttggcaattaatttttggtagacttccgactcgctcaa |
195 |
Q |
| |
|
|||||||| ||||||||| | | |||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
34786553 |
atttggacgagtttggcttttcgaaaaatttaaattttcttctggcaattaatctttggtagacttccgacacgctcaa |
34786631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 31790053 - 31789975
Alignment:
| Q |
117 |
atttggactagtttggctctccaaaaaatacaaattttctcttggcaattaatttttggtagacttccgactcgctcaa |
195 |
Q |
| |
|
||||||||||||||| ||| ||||||| | ||||||||||| || ||||||| |||||||||||||||||||||||||| |
|
|
| T |
31790053 |
atttggactagtttgactccccaaaaagtccaaattttctcatgacaattaacttttggtagacttccgactcgctcaa |
31789975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 33823283 - 33823223
Alignment:
| Q |
135 |
ctccaaaaaatacaaattttctcttggcaattaatttttggtagacttccgactcgctcaa |
195 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||| ||||||||| |||||||||| |
|
|
| T |
33823283 |
ctccaaaaagttcaaattttctcttggcaattaattattgctagacttcctactcgctcaa |
33823223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 7441159 - 7441209
Alignment:
| Q |
152 |
tttctcttggcaattaatttttggtagacttccgactcgctcaactttatc |
202 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
7441159 |
tttctcttggtaagtaatttttggtagacttcccactcgctcaaatttatc |
7441209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 24577508 - 24577590
Alignment:
| Q |
109 |
taaggggtatttggactagtttggctctccaaaaaa-tacaaattttctcttggcaattaatttttggtagacttccgactcg |
190 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||| | ||||||||||||||| |||||||| |||||| ||||| |||||| |
|
|
| T |
24577508 |
taaggggaatttggactagtttagctccaaaaaaaagtccaaattttctcttggaaattaattcttggtaaacttctgactcg |
24577590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 5831744 - 5831700
Alignment:
| Q |
151 |
ttttctcttggcaattaatttttggtagacttccgactcgctcaa |
195 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
5831744 |
ttttctcttggcaaataatttttagtagactcccgactcgctcaa |
5831700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University