View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226-Insertion-21 (Length: 267)
Name: NF3226-Insertion-21
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-21 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 2601751 - 2602005
Alignment:
| Q |
11 |
tccaaatcaattaccgtcctgcaaaaattttcatatataagcacatctatgacaaaacttttatagttataaaataaggtttagattttctaggtccagt |
110 |
Q |
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| T |
2601751 |
tccaaatcaattaccgtcctgcaaaaattttcatatataagcacatctatgacaaaacttacatagttataaaataaggtttagattttccaggtccagt |
2601850 |
T |
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| Q |
111 |
gaactcaaagacaaattaaattcattctatg--atatatacttaagttcttcccttacaacaccgttgttgtatgtnnnnnnnnttacaagtacaaacca |
208 |
Q |
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| T |
2601851 |
gaaatcaaagaca----aaattcattcaatgatatatatacttaagttcttcccttacaacaccgttgttgtatgtaaaataaattacaagtacaagcca |
2601946 |
T |
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| Q |
209 |
agtataactattaagatgtaatttgttttacctgcatataccttcctaacatctctgaa |
267 |
Q |
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| T |
2601947 |
agtataactattatgatgtaatttgttttacctgcatataccttcctaacatctctgaa |
2602005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 2615295 - 2615547
Alignment:
| Q |
12 |
ccaaatcaattaccgtcctgcaaaaattttcatatataagcacatctatgacaaaacttttatagttataaaataaggtttagattttctaggtccagtg |
111 |
Q |
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| T |
2615295 |
ccaaatcaattactgtcctgcaaaaattttcatatataagcacatttatgacaaaacttatatagttataaaataaggtttaaattttctaggtccaatg |
2615394 |
T |
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| Q |
112 |
aactcaaagacaaattaaattcattctatgatatatacttaagttcttcccttacaacaccgttgttgtatgt-nnnnnnnnttacaagtacaaaccaag |
210 |
Q |
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| T |
2615395 |
aactcaaagaca----caattcattcaatgatatatacttaaattcttcccttacaacaccgttgttgtatgtaaaaaaaaattacaagtacaaaccaag |
2615490 |
T |
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| Q |
211 |
tataactattaagatgtaatttgttttacctgcatataccttcctaacatctctgaa |
267 |
Q |
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| T |
2615491 |
tataactattatgatgtaatttgttttacctgcatataccttccaaacatctctgaa |
2615547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 22194161 - 22193921
Alignment:
| Q |
11 |
tccaaatcaattaccgtcctgcaaaaattt-tcatatataagcacatctatgacaaaacttttatagttataaaataaggtttagattttctaggtccag |
109 |
Q |
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| T |
22194161 |
tccaaatcaattagtgtcctgcaaaaaaaaatcatatataagcacatctatgacaaaacatatattgttataaaataaggtttagattttctaggtccat |
22194062 |
T |
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| Q |
110 |
tgaactcaaagacaaattaaattcattctatgatatatacttaagttcttcccttacaacaccgttgttgtatgtnnnnnnnnttacaagtacaaaccaa |
209 |
Q |
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| T |
22194061 |
tgaactcaaagaca----caattcattcaatgatatatacttaaattcttcccttacaacacc-------------aaaataattacaagtacaaaccaa |
22193979 |
T |
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| Q |
210 |
gtataactattaagatgtaatttgttttacctgcatataccttcctaacatctctgaa |
267 |
Q |
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|||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22193978 |
gtataattatttagatgtaattcgttttacctgcatataccttcctaacatctctgaa |
22193921 |
T |
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