View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226-Insertion-22 (Length: 784)

Name: NF3226-Insertion-22
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226-Insertion-22
NF3226-Insertion-22
[»] chr3 (1 HSPs)
chr3 (20-784)||(28821560-28822340)


Alignment Details
Target: chr3 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 20 - 784
Target Start/End: Complemental strand, 28822340 - 28821560
Alignment:
Q  20 aattatttttcggttgcatgataaaaattccacattttttaattagctatttgattaataa---gttacttttctcttttatggaattatttctttcttc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  28822340 aattatttttcggttgcatgataaaaattccacattttttaattagctatttgattaataataagttacttttctcttttatggaattatttctttcttc 28822241  T
Q  117 ttgacttgtctgtccatctgtttaagaaatttacttcgatggaaaatgtgtctttggagtctttgtacttgcctgttagcaaaaagccaaatactatctc 216  Q
    ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  28822240 ttgacttgtc----catctgtttaagaaatttacttcgatggaaaatgtgtctttggagtctttgtacttgcctgttagcaaaaagccaaatactatc-- 28822147  T
Q  217 aggtgacactcataagataaactttagagtaatttcaaaacctcaaaatcacatagtattaaatattaatcaataatttagtatgatacgtgaacattca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28822146 aggtgacactcataagataaactttagagtaatttcaaaacctcaaaatcacatattattaaatattaatcaataatttagtatgatacgtgaacattca 28822047  T
Q  317 aataattcatcaaataactaattattattaattttt--agttggtccatgattatgatgttgccattactctaat------------------actcttg 396  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||                  ||||||     
T  28822046 aataattcatcaaataactaattattattaatttttttagttggtccatgattatgatgttgccattactctaattctctcgtgcatcagcatactctta 28821947  T
Q  397 ttagtcttatctttcaaacgtgccgggatattagttgccaatttagaagagtgtaaagcttaaatttgtctctatgtgccatggtcatgtcaaatctgta 496  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28821946 ttagtcttatctttcacacgtgccgggatattagttgccaatttagaagagtataaagcttaaatttgtctctatgtgccatggtcatgtcaaatctgta 28821847  T
Q  497 taaatactttgaactagcctatgtgtgccggcatattgttattaatttactaggaattgaatcacacaagagaaaaatactaacatttgtccggagtcgg 596  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28821846 taaatactttgaactagcctatgtgtgccgccatattgttattaatt-actaggaattgaatcacacaagagaaaaatactaacatttgtctggagtcgg 28821748  T
Q  597 ggttcagacaatctctgaaatccgactctaaactattttaaattcctaattattatttttgcactgctaactcaaaaggtccaagaattcaaaagtttga 696  Q
    | |||||||||||| | |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  28821747 gtttcagacaatctttaaaatccgactctgaactattttgaattcctaattattatttttgcactgctaactcaaaaagttcaagaattcaaaagtttga 28821648  T
Q  697 atccataaactagagtcgttttagcttttaaaaataaatttaaaagaagatatgaagaggatatcaattgattaggttttgggctcta 784  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28821647 atccataaactagagtcgttttagcttttaaaaataaatttaaaagaagatatgaagaggatatcaattgattaggttttgggctcta 28821560  T

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