View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226-Insertion-24 (Length: 270)
Name: NF3226-Insertion-24
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-24 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 18207834 - 18208079
Alignment:
| Q |
6 |
catcaatatcaatatattatcttgaaaccagaatacagatcttattaagtcgatcacttgttttgatttgttctttcgtaga--------------gtaa |
91 |
Q |
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| T |
18207834 |
catcaatatcaatatattatcttgaaaccagaatacaaatcttattaagttgatcacttgttttgatttgttctttcgtagaagaacctatcgtgagtaa |
18207933 |
T |
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| Q |
92 |
caacagtcataatctctcattcatccatggtatgtttcataaaatagaatagacctcatattacacttttctttggctttgaaattggcttatagagcaa |
191 |
Q |
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| T |
18207934 |
caacagtcataatctctcattcatccatggtatgtttcataaaatagaatagacctcatattacacttttctttggctttgaaattggcttatagagcaa |
18208033 |
T |
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| Q |
192 |
aagtgatagggaattgtttctaatgtatcatttgatattttctggg |
237 |
Q |
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| T |
18208034 |
aagtgatagggaattgtttctaatgtatcatttgatattttctggg |
18208079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 18189425 - 18189660
Alignment:
| Q |
6 |
catcaatatcaatatattatcttgaaaccagaatacagatcttattaagtcgatcacttgttttgatttgttctttcgtaga--------------gtaa |
91 |
Q |
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| T |
18189425 |
catcaatatcaatatattatcttcaaattataataca-atcttattaagtc----acttgttttgatttgttctttcatagaagaacctatagtgagtaa |
18189519 |
T |
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| Q |
92 |
caacagtcataatctctcattcatccatggtatgtttcataaaatagaatagacctcatattacacttttctttggctttgaaattggcttatagagcaa |
191 |
Q |
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| T |
18189520 |
caacaatcataatctctcattcatccatggtatgtttcaaaaaacacaatggacctcatattccacttttctttggctttaaaataggcttatagagcaa |
18189619 |
T |
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| Q |
192 |
aagtgatagggaattgtttctaatgtatcatttgatatttt |
232 |
Q |
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| T |
18189620 |
aagtgatagggaattgtttctaatgtatcatttgatgtttt |
18189660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 18488873 - 18488943
Alignment:
| Q |
6 |
catcaatatcaatatattatcttgaaaccagaatacagatcttattaagtcgatcacttgttttgatttgttcttt |
81 |
Q |
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| T |
18488873 |
catcaatatcaatatattatgttcaatt-agaatacaaatcttattaagtc----acttgttttgatttgttcttt |
18488943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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