View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226-Insertion-27 (Length: 623)

Name: NF3226-Insertion-27
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226-Insertion-27
NF3226-Insertion-27
[»] chr7 (10 HSPs)
chr7 (125-623)||(30165608-30166104)
chr7 (70-603)||(30124785-30125328)
chr7 (176-304)||(30131050-30131178)
chr7 (201-304)||(28180977-28181080)
chr7 (180-441)||(30119904-30120174)
chr7 (372-423)||(30130916-30130967)
chr7 (62-117)||(28180503-28180558)
chr7 (79-124)||(30120228-30120273)
chr7 (586-623)||(30130716-30130753)
chr7 (67-143)||(30131212-30131288)
[»] chr8 (2 HSPs)
chr8 (62-623)||(43164489-43165060)
chr8 (62-623)||(41310814-41311382)
[»] chr2 (3 HSPs)
chr2 (67-304)||(21426471-21426706)
chr2 (62-143)||(21430162-21430242)
chr2 (372-423)||(21426789-21426840)
[»] scaffold1051 (1 HSPs)
scaffold1051 (76-143)||(1972-2039)
[»] chr5 (2 HSPs)
chr5 (382-433)||(42561977-42562028)
chr5 (372-420)||(179414-179462)
[»] chr4 (11 HSPs)
chr4 (382-437)||(48147353-48147408)
chr4 (382-433)||(48863631-48863682)
chr4 (382-441)||(49043804-49043863)
chr4 (383-433)||(50666682-50666732)
chr4 (372-433)||(7878739-7878800)
chr4 (372-444)||(48853037-48853109)
chr4 (382-433)||(7790446-7790497)
chr4 (382-433)||(7908668-7908719)
chr4 (382-433)||(48864401-48864452)
chr4 (382-433)||(49038522-49038573)
chr4 (372-429)||(45371722-45371779)
[»] chr3 (1 HSPs)
chr3 (382-433)||(11024147-11024198)


Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 125 - 623
Target Start/End: Original strand, 30165608 - 30166104
Alignment:
Q  125 tttgattcccatttgccttttataggaaccctgcatgctctgaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataa 224  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30165608 tttgattctcatttgcctt--ataggaaccctgcatgctctgaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataa 30165705  T
Q  225 ttatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatgtcagagatagctcttccaaatgattgttctcgtggaatttatgat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30165706 ttatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttccaaatgattgttctcgtggaatttatgat 30165805  T
Q  325 ttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggacta 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30165806 ttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggacta 30165905  T
Q  425 agactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgatataattggaccaattgctggtggtggattagc 524  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30165906 cgactcttgatttttcttttcatcctcctctggatttttctccaatatgctttacaaattgcggtgatatagttggaccaattgctggtggtggattagc 30166005  T
Q  525 aaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttacttgatgagatcccaaatggcggtgtatatagagtctctgctttc 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30166006 aaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttactttatgagatcccaaatggcggtgtatatagagtctctgctttc 30166104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 70 - 603
Target Start/End: Complemental strand, 30125328 - 30124785
Alignment:
Q  70 ttcaattgacttggaggttttctcattgagagctaatgagtggaaacaaattgagtttgattcccatttgccttttataggaaccctgcatgctctgaag 169  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| |  |||||||||||||||| ||||||||||  |||||||  ||||  ||||| | |    
T  30125328 ttcaattgacttggagattttcccattgagagctaataagtgggaggaaattgagtttgattctcatttgcctt--ataggaatactgctcgctctaacg 30125231  T
Q  170 gtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaagga 269  Q
    |  | ||||||||||||| |||||| |||||  ||||||||||||||||| ||||| || ||||  | | |||||||||| |||||||||||||||||||    
T  30125230 gatggcccagagttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaagga 30125131  T
Q  270 agcgacaatgtcagagatagctcttccaaatgattgt------------tctcgtggaatttatgatttgttggtatttcatggacttatcagtgtatgg 357  Q
    ||||||||||||||| ||||||||||||||||||| |            |||| || |  |||||||||||| ||||||  ||||||||||||| |||||    
T  30125130 agcgacaatgtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatgg 30125031  T
Q  358 aatgtggagaggtctacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttgatttttcttttcatcctcctctgg 457  Q
    | | | |||| |  | ||||||||||| |||||||||| ||||||||| || |||| | |||||||   ||||||| ||||||| | |||||| ||| |     
T  30125030 attcttgagatggatgcagttaagatacgggtgatgcatgaatacgcaatggattcctgttggactcgaactcttgttttttctatgcatcctgctccgc 30124931  T
Q  458 atttttctccaatatgctttacaaattgcggtgatataattgg-accaattgctggtggtggattagcaaagcttaatgacaaaggacaactgcaagagt 556  Q
    | ||||| ||||||| ||||||||| | |||||||||| |||| ||  |||| | | |||||||| |  ||| |||||||||||||||| |||| ||||     
T  30124930 acttttccccaatatcctttacaaaattcggtgatatagttggaactgattg-taggggtggattcgtgaagtttaatgacaaaggacagctgctagagc 30124832  T
Q  557 atcattcctatggtgaccgttacttgatgagatcccaaatggcggtg 603  Q
    |||| |||  ||||||  |||||||  | ||||| ||||| ||||||    
T  30124831 atcactcccgtggtgattgttactttgtaagatctcaaatagcggtg 30124785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 176 - 304
Target Start/End: Complemental strand, 30131178 - 30131050
Alignment:
Q  176 ccagagttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgac 275  Q
    ||||||| |||| |||||| |||||  |||||||||||||||||||||||||| ||||   || |||||||||||| |||||| |||||||||||  |||    
T  30131178 ccagagtcgggttgttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgac 30131079  T
Q  276 aatgtcagagatagctcttccaaatgatt 304  Q
    ||||||||||||| |||||||||||||||    
T  30131078 aatgtcagagataactcttccaaatgatt 30131050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 28181080 - 28180977
Alignment:
Q  201 ttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatgtcagagatagctcttccaaat 300  Q
    |||||||||||||||||||||||||||| ||||  |||| | ||||||||||||||||||||||||||||  |||||||||||| |||||||||||| ||    
T  28181080 ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat 28180981  T
Q  301 gatt 304  Q
    ||||    
T  28180980 gatt 28180977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 180 - 441
Target Start/End: Complemental strand, 30120174 - 30119904
Alignment:
Q  180 agttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatg 279  Q
    |||||||| |||||| |||||  ||||||||||| ||||| ||||| || ||||  | ||| ||||||||||||||||||||||||||||| |||||||     
T  30120174 agttgggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaata 30120075  T
Q  280 tcagagatagctcttccaaatgattgtt------ctcgtggaat---ttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggt 370  Q
    |||||||||||||| ||||| |||| ||      ||  |   ||    ||||||||||||||  || |||| ||||| |||| ||||| |||||| | |     
T  30120074 tcagagatagctctgccaaaggatttttgtgttacttattctatacaatatgatttgttggtgcttgatgggcttattagtgcatggattgtggacatgg 30119975  T
Q  371 ctacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttgatttttct 441  Q
     |  |||  |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  30119974 atgtagtggagatatgggtaatgcaagaatatgcagtgcattcatcttggattaagactcttgttttttct 30119904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 30130967 - 30130916
Alignment:
Q  372 tacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggact 423  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30130967 tacagttaagatatgggtgatgcaagaatacacagtgcattcatcttggact 30130916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 28180558 - 28180503
Alignment:
Q  62 gtatatagttcaattgacttggaggttttctcattgagagctaatgagtggaaaca 117  Q
    |||| |||||||||||| || ||| |||||||||||||||||||| ||||||||||    
T  28180558 gtatctagttcaattgaattagagattttctcattgagagctaataagtggaaaca 28180503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 30120273 - 30120228
Alignment:
Q  79 cttggaggttttctcattgagagctaatgagtggaaacaaattgag 124  Q
    ||||||| |||||||||||||| ||||| ||||||||||| |||||    
T  30120273 cttggagattttctcattgagaactaataagtggaaacaagttgag 30120228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 623
Target Start/End: Complemental strand, 30130753 - 30130716
Alignment:
Q  586 agatcccaaatggcggtgtatatagagtctctgctttc 623  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  30130753 agatcccaaatggcggtgtatacagagtctcttctttc 30130716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 30131288 - 30131212
Alignment:
Q  67 tagttcaattgacttggaggttttctcattgagagctaatgagtggaaacaaattgagtttgattcccatttgcctt 143  Q
    ||||||| ||||||||| | |||||||||||||||||| |   || ||||||||| || ||| ||| ||||||||||    
T  30131288 tagttcacttgacttggggattttctcattgagagctattagctgaaaacaaattcaggttgcttctcatttgcctt 30131212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 62 - 623
Target Start/End: Complemental strand, 43165060 - 43164489
Alignment:
Q  62 gtatatagttcaattgacttggaggttttctcattgagagctaatgagtggaaacaaattgagtttgattcccatttgccttttataggaaccctgcatg 161  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||  || ||||  ||| | |    
T  43165060 gtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgcctt--attggaatactgaaag 43164963  T
Q  162 ctctgaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgat 261  Q
      ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  43164962 acctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgat 43164863  T
Q  262 ttaaaggaagcgacaatgtcagagatagctcttccaaatgattgttctcgtgg----------aa--tttatgatttgttggtatttcatggacttatca 349  Q
    |||||||||  ||||||||||||||| ||||||||| |||||| || | |||           ||  ||||||||||||||||| |||  ||||||||||    
T  43164862 ttaaaggaaaagacaatgtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatca 43164763  T
Q  350 gtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttgatttttcttttcatcc 449  Q
    | ||||||||| |||||| ||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||||||||||| ||||    
T  43164762 gcgtatggaatatggagatgtctacacttaagatatgggtaatgcaagaatacgctgtgcattcatcttggaccaagacttttgatttttcttttgatcc 43164663  T
Q  450 tcctctggatttttctccaatatgctttacaaattgcggtgatataattggaccaattgctggtggtggattagcaaagcttaatgacaaaggacaactg 549  Q
    | |||  |||||||| ||| |||||||||||||| | ||||||||  |||||||| |||||| |||||||||||| |||||| |||||||||||   |||    
T  43164662 tgctccagatttttccccagtatgctttacaaatggtggtgatattgttggaccagttgctgatggtggattagcgaagcttgatgacaaaggaggcctg 43164563  T
Q  550 caagagtatcattcctatggtgaccgttacttgatgagatcccaaatggcggtgtatatagagtctctgctttc 623  Q
    | ||||||||| |||||||||||  || ||||  | ||||| || ||  ||||||||| ||| |||||||||||    
T  43164562 ctagagtatcactcctatggtgattgtcactttgtaagatcgcagatatcggtgtatacagaatctctgctttc 43164489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 62 - 623
Target Start/End: Complemental strand, 41311382 - 41310814
Alignment:
Q  62 gtatatagttcaattgacttggaggttttctcattgagagctaatgagtggaaacaaattgagtttgattcccatttgccttttataggaaccctgcatg 161  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||| | ||| |||||||||||||||||||  |||||||||  ||| |||  ||||| |    
T  41311382 gtatctagttcaattgacttggagattttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgcctt--ataagaatactgcaag 41311285  T
Q  162 ctctgaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgat 261  Q
    |||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  41311284 ctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgat 41311185  T
Q  262 ttaaaggaagcgacaatgtcagagatagctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatca 349  Q
    |||||||||  |||| |||||||||  ||||| ||| ||| || || | |||            |||||||||||||| ||||||||    ||||||| |    
T  41311184 ttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttatta 41311085  T
Q  350 gtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttgatttttcttttcatcc 449  Q
    ||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| ||    
T  41311084 gtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacgcaatacattcatcttggactaagacttttgatttttcttttcaccc 41310985  T
Q  450 tcctctggatttttctccaatatgctttacaaattgcggtgatataattggaccaattgctggtggtggattagcaaagcttaatgacaaaggacaactg 549  Q
       || ||| ||||| ||| |||||||||||||||| || |||||  ||||||||   ||   |||||||||||  |||||||||| |||||||||||||    
T  41310984 cgatccggagttttccccattatgctttacaaattgtggcgatattgttggacca---gccaatggtggattagttaagcttaatgtcaaaggacaactg 41310888  T
Q  550 caagagtatcattcctatggtgaccgttacttgatgagatcccaaatggcggtgtatatagagtctctgctttc 623  Q
    | | ||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||    
T  41310887 ctaaagtatcactcctatagtgaccgttgctttatgagatcccaaatggcggtgtatacagagtctctactttc 41310814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 67 - 304
Target Start/End: Original strand, 21426471 - 21426706
Alignment:
Q  67 tagttcaattgacttggaggttttctcattgagagctaatgagtggaaacaaattgagtttgattcccatttgccttttataggaaccctgcatg-ctct 165  Q
    |||||||||||||||| || ||||||||||||||||| || | ||||||||||||||| ||| ||| |||||||||| |||    ||  || ||| || |    
T  21426471 tagttcaattgacttgaagattttctcattgagagctcataaatggaaacaaattgaggttgcttctcatttgccttatatcattac--tg-atgtctat 21426567  T
Q  166 gaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaa 265  Q
    |||  | | |||||||| ||||||||||| |||||  ||||||||||||||||| |||||| | ||||  |   |||||||||||||||| |||||||||    
T  21426568 gaatttcggcccagagtcgggtcgttcttaaatggggctattcattggctggttcataattctgagaccaaccgggatgttattattgcccttgatttaa 21426667  T
Q  266 aggaagcgacaatgtcagagatagctcttccaaatgatt 304  Q
    ||||| | |||||||||||||||||||||||| ||||||    
T  21426668 aggaaacaacaatgtcagagatagctcttccagatgatt 21426706  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 21430162 - 21430242
Alignment:
Q  62 gtatatagttcaattgacttggaggttttctcattgagagctaatgagtggaaacaaattgagtttgattcccatttgcctt 143  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||| | |||||| |||||||| ||| ||| ||||||||||    
T  21430162 gtatctagttcaattgacttagagattttctcattgagagctaatcaatggaaa-aaattgaggttgcttctcatttgcctt 21430242  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 21426789 - 21426840
Alignment:
Q  372 tacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggact 423  Q
    |||| ||||||||||| |||||||||||||||| || |||||||||||||||    
T  21426789 tacaattaagatatggatgatgcaagaatacgctgtccattcatcttggact 21426840  T

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Target: scaffold1051 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 2039 - 1972
Alignment:
Q  76 tgacttggaggttttctcattgagagctaatgagtggaaacaaattgagtttgattcccatttgcctt 143  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| | ||||||||    
T  2039 tgacttggagattttctcattgagagctaataagtggaaacaaattgagtttggttctcctttgcctt 1972  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 433
Target Start/End: Complemental strand, 42562028 - 42561977
Alignment:
Q  382 atatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttg 433  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  42562028 atatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttg 42561977  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 179414 - 179462
Alignment:
Q  372 tacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttgg 420  Q
    ||||||| | |||||||||||| ||||||||  ||||||||||||||||    
T  179414 tacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 48147408 - 48147353
Alignment:
Q  382 atatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttgattt 437  Q
    |||||||||||| ||||||||  ||||||||| |||||||||||||||||| ||||    
T  48147408 atatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaattt 48147353  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 48863631 - 48863682
Alignment:
Q  382 atatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttg 433  Q
    |||||||||||| ||||||||| ||||||||||||||||| ||| |||||||    
T  48863631 atatgggtgatggaagaatacggagtgcattcatcttggattaaaactcttg 48863682  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 441
Target Start/End: Complemental strand, 49043863 - 49043804
Alignment:
Q  382 atatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttgatttttct 441  Q
    |||||||||||| ||||||||  ||||||||| || |||||||||||||||| |||||||    
T  49043863 atatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttct 49043804  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 433
Target Start/End: Original strand, 50666682 - 50666732
Alignment:
Q  383 tatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttg 433  Q
    ||||||||||| ||||||||  ||||||||||||||||||||| |||||||    
T  50666682 tatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttg 50666732  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 372 - 433
Target Start/End: Original strand, 7878739 - 7878800
Alignment:
Q  372 tacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttg 433  Q
    ||||||| | |||||||||||| ||||||||  ||||||||||||||||| ||| |||||||    
T  7878739 tacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttg 7878800  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 48853037 - 48853109
Alignment:
Q  372 tacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttgatttttctttt 444  Q
    ||||||| | |||||||| ||| ||||||||  ||||| ||| ||||||||||||||||||| | ||||||||    
T  48853037 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttctttt 48853109  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 7790446 - 7790497
Alignment:
Q  382 atatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttg 433  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||| |||||||    
T  7790446 atatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttg 7790497  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 7908668 - 7908719
Alignment:
Q  382 atatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttg 433  Q
    |||||||||||| ||||||||  ||||||||||||||||| ||| |||||||    
T  7908668 atatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttg 7908719  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 48864401 - 48864452
Alignment:
Q  382 atatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttg 433  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||| |||||    
T  48864401 atatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttg 48864452  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 433
Target Start/End: Complemental strand, 49038573 - 49038522
Alignment:
Q  382 atatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttg 433  Q
    |||||||||||| ||||||||  ||| ||||| |||||||||||||||||||    
T  49038573 atatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttg 49038522  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Complemental strand, 45371779 - 45371722
Alignment:
Q  372 tacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggactaagact 429  Q
    ||||||| | |||||||| ||| ||||||||  ||||||||| |||||||||||||||    
T  45371779 tacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagact 45371722  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 433
Target Start/End: Complemental strand, 11024198 - 11024147
Alignment:
Q  382 atatgggtgatgcaagaatacgcagtgcattcatcttggactaagactcttg 433  Q
    |||||||| ||| ||||||||  ||||||||| |||||||||||||||||||    
T  11024198 atatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttg 11024147  T

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