View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226-Insertion-28 (Length: 687)
Name: NF3226-Insertion-28
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-28 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 638; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 8 - 687
Target Start/End: Original strand, 3084191 - 3084870
Alignment:
| Q |
8 |
catagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcagcacatcaccttagggaacacaacatcagtgtagtgtta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3084191 |
catagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcaggacatcaccttagggaacacaacatcagtgtagtgtta |
3084290 |
T |
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| Q |
108 |
gatcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagctgttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3084291 |
gatcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttg |
3084390 |
T |
|
| Q |
208 |
gcattaccaacttcggcwgctacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaac |
307 |
Q |
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| T |
3084391 |
gcattaccaacttcggcagctacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcacaatgtttactcccaaggtacatttaac |
3084490 |
T |
|
| Q |
308 |
aatttgtgttcgatctaaatcaattcttacaaactagtgcgatatgttttcgacttatgaatactttttcaagacatggtacattttcttttaggaagac |
407 |
Q |
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| T |
3084491 |
aatttgtgttccatctaaatcaattcttacaaactagtgcgatatgtcttcgacttattaatactttttcaagacatggtacattttcttttaggaagac |
3084590 |
T |
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| Q |
408 |
atactacatttactgcaaagctttcaaaacaacatgcaattacacttgctaagtcacacccaactcaatttattatgtaaaagttaaaacccaaaccaaa |
507 |
Q |
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| T |
3084591 |
atactacatttactgcaaagctttcaaaacaacatgcaattgcacttgctaagttacacccaactcaatttattatgtaaaagttaaaatccaaaccaaa |
3084690 |
T |
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| Q |
508 |
taaacatcaatatggcctagctaacaaataacaatattacactatttttgggaccgactcccctgcaattaagaaatcaacgtattcatacagccggaca |
607 |
Q |
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| T |
3084691 |
taaacatcaatatggcctagctaacaaataacaatattacactatttttgggaccgactctcctgcaattaagaaatcaacgtattcatacagccggaca |
3084790 |
T |
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| Q |
608 |
ttggtagccgtttgatcaaaattgaacggtccatattcaagcacgatattttgatttataaaatagaaataaaatttgta |
687 |
Q |
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| T |
3084791 |
ttggtagccgtttgatcaaaattgaacggtccatattcaagcacgatattttgatttataaaatagaaataaaatttgta |
3084870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 3093071 - 3093455
Alignment:
| Q |
8 |
catagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcagcacatcaccttagggaacacaacatcagtgtagtgtta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| |
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| T |
3093071 |
catagtatcagctggtgcactaggtagcccacaacttctgatgttgagtggaattggagcagcacatcaccttaagcaacataacatcagtgtagtgtta |
3093170 |
T |
|
| Q |
108 |
gatcaacctttggtaggacaaggaatgtcagataatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagctgttg |
207 |
Q |
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| T |
3093171 |
catcaaccatttgtaggacaaggaatgtcagataacccaatgaactctgtttatgtcccatctccttctccggtagaggtttccctcatttctgttgttg |
3093270 |
T |
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| Q |
208 |
gcattaccaacttcggcwgctacattgaagccgtgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaac |
307 |
Q |
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||||||||| ||| ||| |||| |||||||||| ||||| ||| | |||||| || | ||| || ||| ||||||| ||||| |||||||||| | |
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| T |
3093271 |
gcattaccagctttggcagctatattgaagccgctagcggcgcaacattcaccggttctcaaagagacttcggaatgttttctcccgaggtacattttaa |
3093370 |
T |
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| Q |
308 |
aatttgtgttcgatctaaatcaattcttacaaactagtgcgatatgttttcgacttatga-atactttttcaagacatggtacat |
391 |
Q |
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| T |
3093371 |
aatttgtgttcgatctaaatcaattcttacaaactagtgcgatatgtctttgacctatgacttactttttaaagacatgttacat |
3093455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 659
Target Start/End: Original strand, 3093623 - 3093718
Alignment:
| Q |
561 |
ccgactcccctgcaattaagaaatcaacgtattcatacagccggacattggtagccgtttgatcaaaattgaacggtccatattcaagcacgatatttt |
659 |
Q |
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| T |
3093623 |
ccgactcccctgcaattaaggaatccatgcattcatgcagtcggac---ggtagtcgtttgatcaaaattgaacaagtcatattcaatcgcgatatttt |
3093718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 45938961 - 45939005
Alignment:
| Q |
108 |
gatcaacctttggtaggacaaggaatgtcagataatccaatgaac |
152 |
Q |
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||||| ||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
45938961 |
gatcagcctttggtaggtcaagggatggcagataatccaatgaac |
45939005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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