View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226-Insertion-3 (Length: 715)

Name: NF3226-Insertion-3
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226-Insertion-3
NF3226-Insertion-3
[»] chr7 (25 HSPs)
chr7 (217-380)||(13602950-13603115)
chr7 (555-703)||(46760217-46760363)
chr7 (555-703)||(14805924-14806069)
chr7 (555-703)||(15252918-15253063)
chr7 (555-700)||(18102584-18102727)
chr7 (555-712)||(25737579-25737733)
chr7 (555-699)||(45486009-45486151)
chr7 (555-670)||(6191099-6191211)
chr7 (555-670)||(25944630-25944742)
chr7 (555-681)||(35923306-35923428)
chr7 (555-712)||(19912721-19912875)
chr7 (567-652)||(20123691-20123775)
chr7 (567-666)||(12632342-12632439)
chr7 (567-655)||(4910643-4910728)
chr7 (567-670)||(47779669-47779770)
chr7 (555-664)||(44682931-44683037)
chr7 (555-670)||(14574618-14574730)
chr7 (555-601)||(9158143-9158188)
chr7 (413-446)||(14805763-14805796)
chr7 (413-446)||(15252757-15252790)
chr7 (413-446)||(16562641-16562674)
chr7 (413-446)||(16602988-16603021)
chr7 (413-446)||(18102422-18102455)
chr7 (413-446)||(25737863-25737896)
chr7 (567-600)||(47557663-47557696)
[»] chr3 (47 HSPs)
chr3 (216-380)||(51647767-51647932)
chr3 (243-380)||(8506270-8506408)
chr3 (555-703)||(11054231-11054378)
chr3 (567-712)||(37042329-37042472)
chr3 (44-118)||(8506476-8506550)
chr3 (556-696)||(36546601-36546738)
chr3 (556-696)||(36561577-36561714)
chr3 (555-670)||(30189629-30189741)
chr3 (555-670)||(35963210-35963322)
chr3 (555-670)||(46711612-46711724)
chr3 (555-670)||(14752162-14752274)
chr3 (556-668)||(37075019-37075128)
chr3 (555-670)||(50650991-50651103)
chr3 (569-699)||(31836990-31837118)
chr3 (555-703)||(6075139-6075285)
chr3 (555-712)||(23311507-23311659)
chr3 (555-670)||(7866437-7866549)
chr3 (567-670)||(9264620-9264721)
chr3 (555-670)||(23910467-23910579)
chr3 (555-666)||(28875464-28875572)
chr3 (555-670)||(29235245-29235357)
chr3 (44-118)||(51647594-51647668)
chr3 (569-666)||(47864262-47864357)
chr3 (567-700)||(8703177-8703306)
chr3 (567-700)||(9055064-9055193)
chr3 (581-666)||(50730191-50730275)
chr3 (581-666)||(50782579-50782663)
chr3 (555-645)||(6438141-6438229)
chr3 (567-670)||(41476289-41476391)
chr3 (555-712)||(2927347-2927502)
chr3 (567-670)||(26208083-26208184)
chr3 (555-666)||(54464854-54464961)
chr3 (555-670)||(579099-579204)
chr3 (568-677)||(26724938-26725045)
chr3 (570-670)||(19464147-19464247)
chr3 (50-85)||(32014805-32014840)
chr3 (555-650)||(53270293-53270386)
chr3 (555-649)||(32619804-32619896)
chr3 (638-706)||(47599583-47599650)
chr3 (568-681)||(10114975-10115086)
chr3 (555-601)||(34722626-34722671)
chr3 (568-601)||(10014333-10014366)
chr3 (568-601)||(10252075-10252108)
chr3 (568-601)||(16033008-16033041)
chr3 (568-652)||(20847240-20847322)
chr3 (568-601)||(34194952-34194985)
chr3 (568-601)||(54725631-54725664)
[»] chr1 (39 HSPs)
chr1 (216-380)||(20603130-20603295)
chr1 (556-706)||(28016705-28016852)
chr1 (555-712)||(24190523-24190676)
chr1 (555-703)||(15959603-15959747)
chr1 (555-666)||(2126092-2126200)
chr1 (555-695)||(11241081-11241218)
chr1 (555-670)||(6786892-6787004)
chr1 (555-666)||(32624004-32624112)
chr1 (555-681)||(33369605-33369727)
chr1 (50-118)||(20602963-20603031)
chr1 (555-670)||(6785510-6785621)
chr1 (555-670)||(39555581-39555693)
chr1 (555-668)||(42965813-42965922)
chr1 (555-655)||(35691447-35691545)
chr1 (555-646)||(12448985-12449074)
chr1 (567-703)||(7467924-7468059)
chr1 (567-712)||(3874973-3875113)
chr1 (555-670)||(45226192-45226304)
chr1 (567-670)||(52984998-52985099)
chr1 (581-702)||(1820493-1820613)
chr1 (555-670)||(13136549-13136660)
chr1 (555-670)||(32983167-32983277)
chr1 (567-672)||(46818495-46818598)
chr1 (555-703)||(43667266-43667410)
chr1 (556-670)||(33431614-33431725)
chr1 (567-703)||(44148797-44148932)
chr1 (567-713)||(24728578-24728723)
chr1 (567-655)||(39932581-39932668)
chr1 (567-670)||(3076360-3076461)
chr1 (599-670)||(4672927-4672997)
chr1 (567-670)||(40718743-40718844)
chr1 (558-655)||(46543039-46543134)
chr1 (567-601)||(47600101-47600135)
chr1 (556-601)||(5858433-5858477)
chr1 (568-601)||(5950505-5950538)
chr1 (568-601)||(7397772-7397805)
chr1 (568-601)||(8889759-8889792)
chr1 (568-601)||(13351746-13351779)
chr1 (568-601)||(16688202-16688235)
[»] chr6 (12 HSPs)
chr6 (555-712)||(11082198-11082352)
chr6 (555-712)||(21542472-21542626)
chr6 (555-703)||(35129015-35129162)
chr6 (555-703)||(34177602-34177748)
chr6 (555-712)||(7274828-7274982)
chr6 (555-666)||(12461428-12461536)
chr6 (567-666)||(3095719-3095815)
chr6 (567-666)||(30794191-30794288)
chr6 (620-670)||(17751739-17751788)
chr6 (568-601)||(5300662-5300695)
chr6 (568-601)||(16013494-16013527)
chr6 (568-601)||(16524443-16524476)
[»] chr5 (23 HSPs)
chr5 (555-706)||(6686438-6686588)
chr5 (555-712)||(42273701-42273853)
chr5 (555-712)||(20644068-20644223)
chr5 (555-703)||(43589923-43590069)
chr5 (555-677)||(20039156-20039275)
chr5 (567-655)||(37522598-37522685)
chr5 (555-706)||(11261843-11261991)
chr5 (570-703)||(37562725-37562855)
chr5 (567-670)||(34425395-34425496)
chr5 (620-712)||(12792740-12792830)
chr5 (569-712)||(25840931-25841072)
chr5 (555-665)||(38130113-38130223)
chr5 (555-645)||(32111056-32111144)
chr5 (623-700)||(9957400-9957476)
chr5 (567-652)||(42104262-42104344)
chr5 (567-666)||(19413206-19413303)
chr5 (556-646)||(5984126-5984214)
chr5 (568-668)||(12912292-12912389)
chr5 (555-601)||(32017757-32017802)
chr5 (568-601)||(5369093-5369126)
chr5 (413-446)||(8225325-8225358)
chr5 (568-601)||(10153990-10154023)
chr5 (570-671)||(43454317-43454416)
[»] chr4 (30 HSPs)
chr4 (555-703)||(2229299-2229445)
chr4 (555-703)||(47867931-47868077)
chr4 (555-670)||(20281643-20281755)
chr4 (555-714)||(4058767-4058920)
chr4 (555-703)||(26916377-26916522)
chr4 (555-670)||(20716232-20716344)
chr4 (567-712)||(39078220-39078362)
chr4 (555-670)||(29203558-29203670)
chr4 (567-670)||(7654680-7654781)
chr4 (555-670)||(14332812-14332924)
chr4 (555-670)||(10069749-10069861)
chr4 (567-670)||(41414599-41414700)
chr4 (567-667)||(16604837-16604935)
chr4 (555-666)||(24940417-24940525)
chr4 (567-666)||(55580733-55580830)
chr4 (584-677)||(16473828-16473919)
chr4 (568-670)||(28668989-28669089)
chr4 (555-670)||(56318058-56318170)
chr4 (49-92)||(44162180-44162223)
chr4 (620-670)||(12002621-12002670)
chr4 (567-670)||(17794529-17794630)
chr4 (567-670)||(48793618-48793717)
chr4 (620-670)||(50080444-50080493)
chr4 (624-681)||(52535575-52535630)
chr4 (567-670)||(42915593-42915694)
chr4 (569-670)||(21722670-21722769)
chr4 (568-601)||(23978170-23978203)
chr4 (568-655)||(32203277-32203363)
chr4 (568-601)||(46070577-46070610)
chr4 (568-601)||(49080321-49080354)
[»] chr8 (27 HSPs)
chr8 (555-670)||(34890170-34890282)
chr8 (570-670)||(13143941-13144040)
chr8 (567-703)||(26483595-26483729)
chr8 (570-670)||(43216343-43216441)
chr8 (555-670)||(36190824-36190936)
chr8 (569-666)||(7858593-7858688)
chr8 (555-670)||(30575830-30575943)
chr8 (555-699)||(7022369-7022511)
chr8 (555-651)||(28348662-28348756)
chr8 (555-670)||(8711929-8712036)
chr8 (555-655)||(35525639-35525735)
chr8 (567-670)||(29920264-29920365)
chr8 (555-666)||(34158290-34158399)
chr8 (555-713)||(24892890-24893046)
chr8 (567-645)||(31734178-31734255)
chr8 (567-652)||(35456038-35456121)
chr8 (620-668)||(11158676-11158723)
chr8 (555-655)||(15957921-15958019)
chr8 (620-655)||(8709796-8709831)
chr8 (567-645)||(13143827-13143904)
chr8 (413-446)||(7499584-7499617)
chr8 (568-601)||(8745647-8745680)
chr8 (568-601)||(17336806-17336839)
chr8 (568-601)||(25195109-25195142)
chr8 (568-601)||(26954455-26954488)
chr8 (568-601)||(41362370-41362403)
chr8 (621-670)||(45190700-45190748)
[»] chr2 (26 HSPs)
chr2 (555-670)||(6110193-6110305)
chr2 (555-670)||(19264154-19264266)
chr2 (555-677)||(28599135-28599254)
chr2 (555-715)||(35517177-35517334)
chr2 (555-670)||(3201380-3201492)
chr2 (555-670)||(45085311-45085423)
chr2 (556-670)||(11617079-11617190)
chr2 (555-703)||(45660419-45660567)
chr2 (567-670)||(12938307-12938408)
chr2 (570-675)||(35022967-35023069)
chr2 (555-670)||(41528310-41528423)
chr2 (569-712)||(43415468-43415608)
chr2 (555-681)||(25572099-25572222)
chr2 (555-703)||(8701656-8701801)
chr2 (567-670)||(9864712-9864814)
chr2 (555-655)||(24204537-24204635)
chr2 (570-670)||(35115797-35115896)
chr2 (555-645)||(14874017-14874105)
chr2 (567-712)||(29523993-29524136)
chr2 (555-670)||(33198625-33198737)
chr2 (620-670)||(7645221-7645270)
chr2 (570-670)||(40808714-40808811)
chr2 (555-601)||(33677537-33677582)
chr2 (599-655)||(5280538-5280595)
chr2 (568-601)||(26998383-26998416)
chr2 (413-446)||(35517015-35517048)
[»] scaffold0300 (1 HSPs)
scaffold0300 (555-670)||(568-680)
[»] scaffold0045 (1 HSPs)
scaffold0045 (555-670)||(78011-78123)
[»] scaffold0062 (1 HSPs)
scaffold0062 (555-666)||(44770-44878)
[»] scaffold0442 (1 HSPs)
scaffold0442 (555-668)||(10099-10209)
[»] scaffold0774 (1 HSPs)
scaffold0774 (555-645)||(3447-3535)
[»] scaffold0009 (1 HSPs)
scaffold0009 (567-712)||(157859-158001)
[»] scaffold0132 (2 HSPs)
scaffold0132 (569-655)||(1079-1164)
scaffold0132 (569-655)||(9039-9124)
[»] scaffold0018 (2 HSPs)
scaffold0018 (555-666)||(154915-155022)
scaffold0018 (413-446)||(154754-154787)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 217 - 380
Target Start/End: Complemental strand, 13603115 - 13602950
Alignment:
Q  217 cttttcaatttactaggtttcattttctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaattttaacacattc 316  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13603115 cttttcattttactaggtttcatgttctacaagttcactcagttgcgttttcatgcccaaccattttgagattttgactactgccaattttaacacattc 13603016  T
Q  317 tttatttacatgattactgttttttgt--tagcttttgtatttacagaggtctgatgccaacatac 380  Q
    ||||||||||| ||||||| |||||||  |||||||||||||||||||||| ||||||||||||||    
T  13603015 tttatttacataattactgatttttgttatagcttttgtatttacagaggtttgatgccaacatac 13602950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 555 - 703
Target Start/End: Complemental strand, 46760363 - 46760217
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||| | ||  ||| |||||||| ||||||||||||||||||||||||||    
T  46760363 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-cttttttcaaagaaaacacaaaaaactatactccaaattcttatgttttagt 46760266  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttgggacgga 703  Q
    | |||||||||||||| | |||| ||| || || ||||||||||||||||    
T  46760265 t-ttcttaataagtgtgatttttgtttttttgcttataatttgggacgga 46760217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 555 - 703
Target Start/End: Original strand, 14805924 - 14806069
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||  |||||||  |||||||| |||||||||||||||||||||||||    
T  14805924 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-ctttttc--aaagaaaatacaaaaaactatactccaaattcttatgttttag 14806019  T
Q  654 ttgttcttaataagtgtaaattttatttgttggc-tataatttgggacgga 703  Q
    || |||||||||||||| | |||| ||| || || ||||||||||||||||    
T  14806020 tt-ttcttaataagtgtgatttttgtttttttgcttataatttgggacgga 14806069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 555 - 703
Target Start/End: Original strand, 15252918 - 15253063
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||  |||||||  |||||||| |||||||||||||||||||||||||    
T  15252918 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-ctttttc--aaagaaaatacaaaaaactatactccaaattcttatgttttag 15253013  T
Q  654 ttgttcttaataagtgtaaattttatttgttggc-tataatttgggacgga 703  Q
    || |||||||||||||| | |||| ||| || || ||||||||||||||||    
T  15253014 tt-ttcttaataagtgtgatttttgtttttttgcttataatttgggacgga 15253063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 555 - 700
Target Start/End: Original strand, 18102584 - 18102727
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||||| | ||  ||| |||||||| ||||||||||||||||||||||||||    
T  18102584 cataaccaat-ggccaatgaaaattgtttttacatcttcctataaaa-cttttttcaaagaaaacacaaaaaattatactccaaattcttatgttttagt 18102681  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttgggac 700  Q
    | |||||||||||||| | |||| ||| || || |||||||||||||    
T  18102682 t-ttcttaataagtgtgatttttttttttttgcttataatttgggac 18102727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 555 - 712
Target Start/End: Complemental strand, 25737733 - 25737579
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||  ||| ||| |||| ||||| ||||||| ||||||||||||    
T  25737733 cataaccaatag-ccaatgaaaattgtttttacatcttcctat-aaaactttttccaaagaaaacacacaaaactataccccaaatttttatgttttagt 25737636  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttgggacggaagggagtat 712  Q
    | |||||||||||||| | |||| ||| || || ||||||||||||||| |||||||||    
T  25737635 t-ttcttaataagtgtgatttttgtttttttgcttataatttgggacgg-agggagtat 25737579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 555 - 699
Target Start/End: Original strand, 45486009 - 45486151
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||| ||||||||||||    
T  45486009 cataaccaatag-ccaatgaaaattatttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaactatactccaaatttttatgttttagt 45486106  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttggga 699  Q
    | |||||||||||||| | |||| ||| || || ||||||||||||    
T  45486107 t-ttcttaataagtgtgatttttgtttttttgcttataatttggga 45486151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 6191099 - 6191211
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||   ||  ||| |||||||| ||||||||||||||||||||||||||    
T  6191099 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-cttttttaaaagaaaacacaaaaaactatactccaaattcttatgttttagt 6191196  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  6191197 t-ttcttaataagtgt 6191211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 25944630 - 25944742
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||  ||| |||||||  |||||||||||||||||| |||||||    
T  25944630 cataaccaat-ggccaatgaaaattgtttttacatcttcctat-aaaactttttccaaagaaaacacaaaaacttatactccaaattcttatattttagt 25944727  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  25944728 t-ttcttaataagtgt 25944742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 681
Target Start/End: Original strand, 35923306 - 35923428
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagaca-aaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||||| ||||||||||||||||| |||| |||||||||| ||||||||| ||| ||||| ||||||||||||| |||||||||||    
T  35923306 cataaccaatag-ccaatgaaaattgtttttacatctttctat-aaaacttttt-ccaaagaaa-acacaaaaactatactccaaatttttatgttttag 35923401  T
Q  654 ttgttcttaataagtgtaaattttattt 681  Q
    || |||||||||||||| | ||||||||    
T  35923402 tt-ttcttaataagtgtgatttttattt 35923428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 555 - 712
Target Start/End: Complemental strand, 19912875 - 19912721
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||  ||||||| |||||||||||||| || |||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  19912875 cataaccaataa-ccaatgaaaattgtttttacattttactataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagt 19912778  T
Q  655 tgttcttaataagtgtaaattttatt-tgttggctataatttgggacggaagggagtat 712  Q
    | |||||||||| ||| | |||| || | |||  ||||||||||||||| |||||||||    
T  19912777 t-ttcttaataaatgtgatttttgttcttttgtttataatttgggacgg-agggagtat 19912721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 567 - 652
Target Start/End: Complemental strand, 20123775 - 20123691
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaa-agacaaaaaagtatactccaaattcttatgtttta 652  Q
    |||||||| ||||||||||||||||| |||||||| |||||||| |||||| | |||||||| ||||||||||||||||||||||||    
T  20123775 gccaatgaaaattgtttttacatcttgctataaaa-ctttttcc-aaagaatacacaaaaaactatactccaaattcttatgtttta 20123691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 666
Target Start/End: Complemental strand, 12632439 - 12632342
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||||||||||| ||| |||||| | ||  ||| | |||||| |||||||||||||||||||||||| || ||||||||||    
T  12632439 gccaatgaaaattgtttttacatcttcctatgaaa-cttttttcaaagaaaacataaaaaactatactccaaattcttatgttttaatt-ttcttaataa 12632342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 567 - 655
Target Start/End: Complemental strand, 4910728 - 4910643
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    |||||||| |||| ||||||||||||||||| |||||||||| | ||||||| ||| |||| |||||| ||||||||||||||||||||    
T  4910728 gccaatgaaaattatttttacatcttcctat-aaaacttttt-ctaaagaaa-acacaaaaatatacttcaaattcttatgttttagtt 4910643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 47779669 - 47779770
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| ||||||||||||||||||| ||  |||||| |||  ||  ||| |||||||| ||| || |||||||||||| ||||||| ||||||||||    
T  47779669 gccaatgaaaattgtttttacatcttcccat-gaaacttattctaaagaaaacacaaaaaactatgctacaaattcttatgctttagtt-ttcttaataa 47779766  T
Q  667 gtgt 670  Q
    ||||    
T  47779767 gtgt 47779770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 664
Target Start/End: Original strand, 44682931 - 44683037
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| | ||||| ||||||||||||||||||  || ||| ||| |||| ||| ||| |||||| | |||||||||||||||||| || ||||    
T  44682931 cataaccaatagtc-aatgaaaattgtttttacatcttcgcatcaaa-cttattccaaaaaaaacacaaaatattatactccaaattcttattttctagt 44683028  T
Q  655 tgttcttaat 664  Q
    | ||||||||    
T  44683029 t-ttcttaat 44683037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 14574618 - 14574730
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| | ||||  |||| |||||||||||||| || ||| ||| ||  |||  ||| |||||||| |||||||||||||||||| |||| ||    
T  14574618 cataaccaatagac-aatggaaattatttttacatcttcccatgaaa-cttattatcaagaaaacacaaaaaactatactccaaattcttatattttggt 14574715  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  14574716 t-ttcttaataagtgt 14574730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 601
Target Start/End: Original strand, 9158143 - 9158188
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaa 601  Q
    |||||||||| |||||| || ||||||||||||||||||||||||||    
T  9158143 cataaccaat-ggccaaagaaaattgtttttacatcttcctataaaa 9158188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 14805763 - 14805796
Alignment:
Q  413 gtactccctccgtcccataatatatgcaaaaaaa 446  Q
    |||||||||||||||||||||||| |||||||||    
T  14805763 gtactccctccgtcccataatataagcaaaaaaa 14805796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 15252757 - 15252790
Alignment:
Q  413 gtactccctccgtcccataatatatgcaaaaaaa 446  Q
    |||||||||||||||||||||||| |||||||||    
T  15252757 gtactccctccgtcccataatataagcaaaaaaa 15252790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 16562641 - 16562674
Alignment:
Q  413 gtactccctccgtcccataatatatgcaaaaaaa 446  Q
    |||||||||||||||||||||||| |||||||||    
T  16562641 gtactccctccgtcccataatataagcaaaaaaa 16562674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 16603021 - 16602988
Alignment:
Q  413 gtactccctccgtcccataatatatgcaaaaaaa 446  Q
    |||||||||||||||||||||||| |||||||||    
T  16603021 gtactccctccgtcccataatataagcaaaaaaa 16602988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 18102422 - 18102455
Alignment:
Q  413 gtactccctccgtcccataatatatgcaaaaaaa 446  Q
    |||||||||||||||||||||||| |||||||||    
T  18102422 gtactccctccgtcccataatataagcaaaaaaa 18102455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 25737896 - 25737863
Alignment:
Q  413 gtactccctccgtcccataatatatgcaaaaaaa 446  Q
    |||||||||||||||||||||||| |||||||||    
T  25737896 gtactccctccgtcccataatataagcaaaaaaa 25737863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 600
Target Start/End: Complemental strand, 47557696 - 47557663
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaa 600  Q
    |||||||| |||||||||||||||||||||||||    
T  47557696 gccaatgaaaattgtttttacatcttcctataaa 47557663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 5e-61; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 216 - 380
Target Start/End: Original strand, 51647767 - 51647932
Alignment:
Q  216 ccttttcaatttactaggtttcattttctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaattttaacacatt 315  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  51647767 ccttttcagtttactaggtttcatgttctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactaccaattttgacacatt 51647866  T
Q  316 ctttatttacatgattactgttttttgt--tagcttttgtatttacagaggtctgatgccaacatac 380  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||| ||| ||||||| ||||    
T  51647867 ctttatttacatgattactgttttttgttatagcttttctatttacagagttct-atgccaaaatac 51647932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 243 - 380
Target Start/End: Complemental strand, 8506408 - 8506270
Alignment:
Q  243 ctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaattttaacacattctttatttacatgattactgttttttg 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8506408 ctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaattttgacacattctttatttacatgattactgttttttg 8506309  T
Q  343 t--tagcttttgtatttacagaggtctgatgccaacatac 380  Q
    |  |||||||| ||||||||||| ||| ||||||| ||||    
T  8506308 ttatagcttttctatttacagagttct-atgccaaaatac 8506270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 555 - 703
Target Start/End: Complemental strand, 11054378 - 11054231
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||| |||||| |||||||||  |||||||| |||||||||||||||||| ||||||    
T  11054378 cataaccaatag-ccaatgaaaattgtttttaaatcttcctataaaa-cttttttccaaagaaaacacaaaaaactatactccaaattcttatattttag 11054281  T
Q  654 ttgttcttaataagtgtaaattttatttgttggc-tataatttgggacgga 703  Q
    || |||||||||||| | | |||| |||||| || ||||||||||||||||    
T  11054280 tt-ttcttaataagtatgatttttgtttgtttgcttataatttgggacgga 11054231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 567 - 712
Target Start/End: Complemental strand, 37042472 - 37042329
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||||||||||| |||||||||||| |   ||| |||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  37042472 gccaatgaaaattgtttttacatcttcctat-aaaactttttccaacgaaaacacaaaaaactatactccaaatttttatgttttagtt-ttcttaataa 37042375  T
Q  667 gtgtaaattttatttgttggc-tataatttgggacggaagggagtat 712  Q
    |||| | |||| ||| || || ||||||||||||||| |||||||||    
T  37042374 gtgtgatttttgtttttttgcttataatttgggacgg-agggagtat 37042329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 8506550 - 8506476
Alignment:
Q  44 gtaaatgcatctcatcttttctgctattcatataagcttcatcatctcaatttctttccaactaactcttcatct 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||    
T  8506550 gtaaacgcatctcatcttttctgctattcatataagcttcatcgtctcaaattttttccaactaactcttcatct 8506476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 556 - 696
Target Start/End: Original strand, 36546601 - 36546738
Alignment:
Q  556 ataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    ||||||||||| ||||||| ||||| |||||||||||||||| ||| |||||||| ||  ||| |||||||| ||||||| ||||| |||||||||||||    
T  36546601 ataaccaatag-ccaatgaaaattggttttacatcttcctatgaaa-ctttttccaaagaaaatacaaaaaactatactctaaatttttatgttttagtt 36546698  T
Q  656 gttcttaataagtgtaaattttatttgttggctataatttg 696  Q
     |||||||||||||| |||||| ||| |||  |||||||||    
T  36546699 -ttcttaataagtgtgaatttttttttttgcttataatttg 36546738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 556 - 696
Target Start/End: Complemental strand, 36561714 - 36561577
Alignment:
Q  556 ataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    ||||||||||| ||||||| ||||| |||||||||||||||| ||| |||||||| ||  ||| |||||||| ||||||| ||||| |||||||||||||    
T  36561714 ataaccaatag-ccaatgaaaattggttttacatcttcctatgaaa-ctttttccaaagaaaatacaaaaaactatactctaaatttttatgttttagtt 36561617  T
Q  656 gttcttaataagtgtaaattttatttgttggctataatttg 696  Q
     |||||||||||||| |||||| ||| |||  |||||||||    
T  36561616 -ttcttaataagtgtgaatttttttttttgcttataatttg 36561577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 30189629 - 30189741
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||||||||| | ||  ||| |||||||| |||||||||||||||||||||||| |    
T  30189629 cataaccaatag-ccaatgaaaattgtttttacatcttcctat-aaaacttttttcaaagaaaacacaaaaaactatactccaaattcttatgttttaat 30189726  T
Q  655 tgttcttaataagtgt 670  Q
    | || |||||||||||    
T  30189727 t-tttttaataagtgt 30189741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 35963210 - 35963322
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||  ||||| | |||||||||| ||||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  35963210 cataaccaataa-ccaataaaaattgtttttccatcttcctataaaa-ctttttccaaacaaaacacaaaaaactatactccaaattcttatgttttagt 35963307  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  35963308 t-ttcttaataagtgt 35963322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 46711724 - 46711612
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||| |||||| | ||  ||| |||||||| ||||||||||||||||||||||| ||    
T  46711724 cataaccaatag-ccaatgaatattgtttttacatcttcctataaaa-cttttttcaaagaaaacacaaaaaattatactccaaattcttatgttttcgt 46711627  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  46711626 t-ttcttaataagtgt 46711612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 14752274 - 14752162
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| | ||||| |||||||||||||||||||||||||   ||||| |||||||||  |||||||| |||||||||||||||||||||||||    
T  14752274 cataaccaatagtc-aatgaaaattgtttttacatcttcctataaat--ttttttccaaagaaaacacaaaaaattatactccaaattcttatgttttag 14752178  T
Q  654 ttgttcttaataagtgt 670  Q
    || |||| |||||||||    
T  14752177 tt-ttctaaataagtgt 14752162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 556 - 668
Target Start/End: Original strand, 37075019 - 37075128
Alignment:
Q  556 ataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||||| |||||||| ||  ||| |||||||| |||||| ||||||||||||||||||||    
T  37075019 ataaccaatag-ccaatgaaaattgtgtttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaattatacttcaaattcttatgttttagtt 37075116  T
Q  656 gttcttaataagt 668  Q
     || |||||||||    
T  37075117 -tttttaataagt 37075128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 50651103 - 50650991
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| | ||||| |||||||||||||||||||||| |||||||||| | ||  ||| |||||||| |||| | |||||||||||||||||||    
T  50651103 cataaccaatagtc-aatgaaaattgtttttacatcttcctat-aaaactttttgcaaagaaaacacaaaaaactatatttcaaattcttatgttttagt 50651006  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  50651005 t-ttcttaataagtgt 50650991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 699
Target Start/End: Original strand, 31836990 - 31837118
Alignment:
Q  569 caatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagt 668  Q
    |||||| |||||||||| ||| ||||||||||| |||||||| ||  ||| |||||||| |||||||||| |||||||||||||||| ||||||||||||    
T  31836990 caatgaaaattgtttttgcatattcctataaaa-ctttttccaaagaaaatacaaaaaactatactccaacttcttatgttttagtt-ttcttaataagt 31837087  T
Q  669 gtaaattttatttgttggctataatttggga 699  Q
    || | | |||||| |||  || |||||||||    
T  31837088 gtgattattattttttgcttacaatttggga 31837118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 555 - 703
Target Start/End: Original strand, 6075139 - 6075285
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||| ||||||||| |||||||||||| ||||||| ||| | |||||||| ||  ||| |||||||| ||||||||||||||||||  ||||||    
T  6075139 cataaccaat-ggccaatgaaaattgtttttacttcttcctgtaaca-ctttttccaaagaaaacacaaaaaattatactccaaattcttatactttagt 6075236  T
Q  655 tgttcttaataagtgtaaat-tttatttgttggctataatttgggacgga 703  Q
    | |||||||||||||| | | ||||||| |||  |||||||||| |||||    
T  6075237 t-ttcttaataagtgtgattctttattttttgcttataatttggaacgga 6075285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 555 - 712
Target Start/End: Complemental strand, 23311659 - 23311507
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||||||||| | ||  ||| ||| |||| ||||||| ||||| ||||||||||||    
T  23311659 cataaccaatag-ccaatgaaaattgtttttacatcttcctat-aaaacttttttcaaagaaaacacacaaaactatactctaaatttttatgttttagt 23311562  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataatttgggacggaagggagtat 712  Q
    | |||||||||| ||| | |||| ||| ||   ||||||||||||||| |||||||||    
T  23311561 t-ttcttaataa-tgtgatttttgtttttttcttataatttgggacgg-agggagtat 23311507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 7866549 - 7866437
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| | ||||| |||||||||||||||||| ||||||| |||||| | ||  ||| | |||||| ||||||| ||||||||||||||||||    
T  7866549 cataaccaatagtc-aatgaaaattgtttttacatcttcttataaaa-cttttttcaaagaaaataaaaaaaactatactctaaattcttatgttttagt 7866452  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  7866451 t-ttcttaataagtgt 7866437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 9264620 - 9264721
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||||||| ||| |||||||||| | ||  ||| |||||||| ||||||| |||||| |||||||||||| ||||||||||    
T  9264620 gccaatgaaaattgtttttacatcttcatat-aaaacttttttcaaagaaaacacaaaaaactatactcaaaattcatatgttttagtt-ttcttaataa 9264717  T
Q  667 gtgt 670  Q
    ||||    
T  9264718 gtgt 9264721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 23910579 - 23910467
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||| ||||||||||||||||| |||||||||| | ||  ||| |||||||  ||||||| |||||||||||||||| |    
T  23910579 cataaccaatag-ccaatgaaaattatttttacatcttcctat-aaaactttttacaaagaaaacacaaaaagctatactctaaattcttatgttttaat 23910482  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  23910481 t-ttcttaataagtgt 23910467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 555 - 666
Target Start/End: Original strand, 28875464 - 28875572
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||| ||| |||||||||||| ||  ||| ||||| || |||| |||||||||||||| ||||||    
T  28875464 cataaccaatag-ccaatgaaaattgtttttacatcttcttat-aaaactttttccaaagaaaacacaaataactatagtccaaattcttatgctttagt 28875561  T
Q  655 tgttcttaataa 666  Q
    | ||||||||||    
T  28875562 t-ttcttaataa 28875572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 29235245 - 29235357
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||| ||||||||||||||||| ||| | |||||  ||  ||| |||||||| ||||||| ||||||||||||||||||    
T  29235245 cataaccaatag-ccaatgaaaattatttttacatcttcctattaaa-cgttttctaaagaaaatacaaaaaactatactctaaattcttatgttttagt 29235342  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  29235343 t-ttcttaataagtgt 29235357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 51647594 - 51647668
Alignment:
Q  44 gtaaatgcatctcatcttttctgctattcatataagcttcatcatctcaatttctttccaactaactcttcatct 118  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| |||||| || ||| ||||||||| |||||||    
T  51647594 gtaaacgcatctcatcttttctgctattcatataatcttcatcgtctcaaatttttttcaactaactattcatct 51647668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 47864262 - 47864357
Alignment:
Q  569 caatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||| |||||||||||||||||||||| |||||||||| | ||  |||  ||||||| ||||||||||||||| ||||||||||| ||||||||||    
T  47864262 caatgaaaattgtttttacatcttcctat-aaaacttttttcaaagaaaatgcaaaaaactatactccaaattctcatgttttagtt-ttcttaataa 47864357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 700
Target Start/End: Original strand, 8703177 - 8703306
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||||||||||||||   ||||| ||||| | | |||||||  ||||||||||||||||||||||||||| || |||||||    
T  8703177 gccaatga-aattgtttttacatcttcctataaat--ttttttccaaaaacacacaaaaac-tatactccaaattcttatgttttagtt-tttttaataa 8703271  T
Q  667 gtgtaaattttatttgttggc-tataatttgggac 700  Q
    |||| | |||| ||| || || |||||||||||||    
T  8703272 gtgtgatttttttttatttgcttataatttgggac 8703306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 700
Target Start/End: Original strand, 9055064 - 9055193
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||||||||||||||   ||||| ||||| | | |||||||  ||||||||||||||||||||||||||| || |||||||    
T  9055064 gccaatga-aattgtttttacatcttcctataaat--ttttttccaaaaacacacaaaaac-tatactccaaattcttatgttttagtt-tttttaataa 9055158  T
Q  667 gtgtaaattttatttgttggc-tataatttgggac 700  Q
    |||| | |||| ||| || || |||||||||||||    
T  9055159 gtgtgatttttttttatttgcttataatttgggac 9055193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 581 - 666
Target Start/End: Original strand, 50730191 - 50730275
Alignment:
Q  581 tttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaag-tatactccaaattcttatgttttagttgttcttaataa 666  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  50730191 tttttacatcttcctataaaa-ctttttcc-aaagaaagcacaaaaaaactatactccaaattcttatgttttagtt-ttcttaataa 50730275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 581 - 666
Target Start/End: Complemental strand, 50782663 - 50782579
Alignment:
Q  581 tttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaag-tatactccaaattcttatgttttagttgttcttaataa 666  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  50782663 tttttacatcttcctataaaa-ctttttcc-aaagaaagcacaaaaaaactatactccaaattcttatgttttagtt-ttcttaataa 50782579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 645
Target Start/End: Original strand, 6438141 - 6438229
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattctta 645  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||| |||||| | ||  ||| |||||||| |||||||||||||||||    
T  6438141 cataaccaatag-ccaatgaaaattgtttttacatcttcctat-aaagcttttttcaaagaaaacacaaaaaactatactccaaattctta 6438229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 567 - 670
Target Start/End: Complemental strand, 41476391 - 41476289
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgtttt-agttgttcttaata 665  Q
    |||||||| |||| |||||||||||| |||||||| |||||| | ||  ||| |||||||| ||||||||||||| ||||||||| |||| |||||||||    
T  41476391 gccaatgaaaattatttttacatctttctataaaa-cttttttcaaagaaaacacaaaaaactatactccaaatttttatgtttttagtt-ttcttaata 41476294  T
Q  666 agtgt 670  Q
    |||||    
T  41476293 agtgt 41476289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 555 - 712
Target Start/End: Original strand, 2927347 - 2927502
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagac-aaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||||| |||| |||||||||||||| || ||||||| |||| ||  ||| || |||||| ||| || ||||||||||||||||||    
T  2927347 cataaccaatag-ccaatgaaaattatttttacatcttcccat-aaaacttattccaaagaaaatacaaaaaaactatgctacaaattcttatgttttag 2927444  T
Q  654 ttgttcttaataagtgtaaattttatttgttggc-tataatttgggacggaagggagtat 712  Q
    || |||||||||| ||| | |||| ||| || || |||||||| |||||| |||||||||    
T  2927445 tt-ttcttaataaatgtgatttttgtttttttgcttataatttaggacgg-agggagtat 2927502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 26208083 - 26208184
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| ||||||||||||||||| | || ||| ||| ||||  |  ||| |||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  26208083 gccaatgaaaattgtttttacatcttaccatgaaa-cttattccagacaaaacacaaaaaactatactctaaattcttatgttttagtt-ttcttaataa 26208180  T
Q  667 gtgt 670  Q
    ||||    
T  26208181 gtgt 26208184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 666
Target Start/End: Complemental strand, 54464961 - 54464854
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    |||||   |||||||  |||||||| |||||| ||||||||||||||||||    
T  54464961 cataaccaatag-ccaacgaaaattgtttttacatcttcctataattttttttt---aaagaaaacacaaaaaattatacttcaaattcttatgttttag 54464866  T
Q  654 ttgttcttaataa 666  Q
    || ||||||||||    
T  54464865 tt-ttcttaataa 54464854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 579204 - 579099
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||||||||| |||||||||| |||||||||| | ||  ||| ||||||||       ||||||||||||||||||||    
T  579204 cataaccaatag-ccaatgaaaattgtttttatatcttcctat-aaaacttttttcaaagaaaacacaaaaaa-------ccaaattcttatgttttagt 579114  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  579113 t-ttcttaataagtgt 579099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 677
Target Start/End: Complemental strand, 26725045 - 26724938
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataag 667  Q
    ||||||| ||||||||||||||||||  | |||| ||| |||| ||  ||| |||||||| |||||| ||||||||||| |||||||| |||||||||||    
T  26725045 ccaatgaaaattgtttttacatcttctcagaaaa-cttattccaaagaaaacacaaaaaattatacttcaaattcttatattttagtt-ttcttaataag 26724948  T
Q  668 tgtaaatttt 677  Q
    | | ||||||    
T  26724947 tatgaatttt 26724938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 570 - 670
Target Start/End: Original strand, 19464147 - 19464247
Alignment:
Q  570 aatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtata--ctccaaattcttatgttttagttgttcttaataag 667  Q
    ||||| ||||||||||  |||||||||||||| |||||| | ||  ||| |||||||| ||||  ||||||||||||||||||||||| || ||||||||    
T  19464147 aatgaaaattgtttttcaatcttcctataaaa-cttttttcaaagaaaacacaaaaaactatatactccaaattcttatgttttagtt-ttgttaataag 19464244  T
Q  668 tgt 670  Q
    |||    
T  19464245 tgt 19464247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 32014840 - 32014805
Alignment:
Q  50 gcatctcatcttttctgctattcatataagcttcat 85  Q
    ||||||||||||||||||||||||||||||||||||    
T  32014840 gcatctcatcttttctgctattcatataagcttcat 32014805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 555 - 650
Target Start/End: Original strand, 53270293 - 53270386
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttt 650  Q
    |||||||||||||| ||||| |||| ||||| |||||| |||| ||| |||||| | ||  ||| |||||||| ||||||||||||||||||||||    
T  53270293 cataaccaataggc-aatgaaaattattttttcatctttctatgaaa-cttttttcaaagaaaacacaaaaaactatactccaaattcttatgttt 53270386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 649
Target Start/End: Complemental strand, 32619896 - 32619804
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaag-aaagacaaaaaagtatactccaaattcttatgtt 649  Q
    |||||||||||| ||||||| |||| ||||||||||||| ||||||| || ||  |||||| ||| |||||| | ||||||||||||||| |||||    
T  32619896 cataaccaatag-ccaatgaaaattatttttacatcttcttataaaacctatt--ccaaagaaaacacaaaatattatactccaaattctcatgtt 32619804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 706
Target Start/End: Original strand, 47599583 - 47599650
Alignment:
Q  638 aattcttatgttttagttgttcttaataagtgtaaattttatttgttggctataatttgggacggaagg 706  Q
    |||| ||||||||||||| || ||||||||||||| |||| ||| |||  |||||||||||||||||||    
T  47599583 aatttttatgttttagttttt-ttaataagtgtaattttttttttttgcttataatttgggacggaagg 47599650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 681
Target Start/End: Original strand, 10114975 - 10115086
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaaactttttcccaaaga-aagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    ||||||| ||||||||||||||||||||||||||  | |||  |||||| || |||||||| |||  | |||| |  |||||||||||| ||||||||||    
T  10114975 ccaatgaaaattgtttttacatcttcctataaaacttattt--caaagataatacaaaaaattatgttacaaactactatgttttagtt-ttcttaataa 10115071  T
Q  667 gtgtaaattttattt 681  Q
    |||| | ||||||||    
T  10115072 gtgtgatttttattt 10115086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 601
Target Start/End: Complemental strand, 34722671 - 34722626
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaa 601  Q
    |||||||||||| ||||||| |||||||||||||||||| |||||||    
T  34722671 cataaccaatag-ccaatgaaaattgtttttacatcttcttataaaa 34722626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 10014333 - 10014366
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  10014333 ccaatgaaaattgtttttacatcttcctataaaa 10014366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 10252075 - 10252108
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  10252075 ccaatgaaaattgtttttacatcttcctataaaa 10252108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 16033041 - 16033008
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  16033041 ccaatgaaaattgtttttacatcttcctataaaa 16033008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 652
Target Start/End: Complemental strand, 20847322 - 20847240
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagaca-aaaaagtatactccaaattcttatgtttta 652  Q
    ||||||| ||||||||  |||||||||||| ||| ||| |||| ||||||| ||| ||||| ||||||||||||||||||||||||    
T  20847322 ccaatgaaaattgtttgcacatcttcctatgaaa-cttattcc-aaagaaa-acacaaaaattatactccaaattcttatgtttta 20847240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 34194952 - 34194985
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  34194952 ccaatgaaaattgtttttacatcttcctataaaa 34194985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 54725664 - 54725631
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  54725664 ccaatgaaaattgtttttacatcttcctataaaa 54725631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 216 - 380
Target Start/End: Original strand, 20603130 - 20603295
Alignment:
Q  216 ccttttcaatttactaggtttcattttctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaattttaacacatt 315  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  20603130 ccttttcagtttactaggtttcatgttctacaagctcactcagttgcgtattcatgcccaaccattttgagattttgactactgccaaatttgacacatt 20603229  T
Q  316 ctttatttacatgattactgttttttgt--tagcttttgtatttacagaggtctgatgccaacatac 380  Q
    ||||||||||||||||||||||||||||  ||||||||  |||||||||| ||| ||||||| ||||    
T  20603230 ctttatttacatgattactgttttttgttatagcttttcaatttacagagttct-atgccaaaatac 20603295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 556 - 706
Target Start/End: Complemental strand, 28016852 - 28016705
Alignment:
Q  556 ataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaag-aaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||  |||||  ||||| ||| || ||||| ||||||| ||||||||||||||||||    
T  28016852 ataaccaatag-ccaatgaaaattgtttttacatcttcctataaaacattttt--caaagaaaacaccaaaaactatactctaaattcttatgttttagt 28016756  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataatttgggacggaagg 706  Q
    | |||||||||||||| | |||||||| |||  |||||||||||||||||||    
T  28016755 t-ttcttaataagtgtgatttttattttttgcttataatttgggacggaagg 28016705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 555 - 712
Target Start/End: Original strand, 24190523 - 24190676
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||| | ||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  24190523 cataaccaatag-ccaatgaaaattgtttttacatctccgtataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagt 24190620  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataatttgggacggaagggagtat 712  Q
    | |||||||||||||| | |||| ||| ||   ||||||||||||||| |||||||||    
T  24190621 t-ttcttaataagtgtgatttttgtttttttcttataatttgggacgg-agggagtat 24190676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 555 - 703
Target Start/End: Complemental strand, 15959747 - 15959603
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||| | ||  ||| |||||||| ||||||||||||||||||||||||||    
T  15959747 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-cttttttcaaagaaaacacaaaaaattatactccaaattcttatgttttagt 15959650  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataatttgggacgga 703  Q
    | |||||||||| |||  ||||| ||| ||   ||||||||||||||||    
T  15959649 t-ttcttaataaatgt-gatttttttttttacttataatttgggacgga 15959603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 555 - 666
Target Start/End: Original strand, 2126092 - 2126200
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||  ||| |||||||| |||| |||||||||||||||||||||    
T  2126092 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaactatattccaaattcttatgttttagt 2126189  T
Q  655 tgttcttaataa 666  Q
    | ||||||||||    
T  2126190 t-ttcttaataa 2126200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 555 - 695
Target Start/End: Original strand, 11241081 - 11241218
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||| ||  ||| |||||||| |||||||||||||||||||||||| |    
T  11241081 cataaccaatag-ccaatgaaaattggttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttaat 11241178  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataattt 695  Q
    | || ||||||||||| | |||| ||| |||  ||||||||    
T  11241179 t-tttttaataagtgtgattttttttttttgcttataattt 11241218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 6786892 - 6787004
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||| ||||||||||| ||||||| |||||||| ||  ||| |||||||| ||||||||||||||| ||||||||||    
T  6786892 cataaccaatag-ccaatgaaaattgtgtttacatcttcatataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattctcatgttttagt 6786989  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  6786990 t-ttcttaataagtgt 6787004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 666
Target Start/End: Complemental strand, 32624112 - 32624004
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||||||||| | ||  ||| |||||||| || |||||||||||||||||||||||    
T  32624112 cataaccaat-ggccaatgaaaattgtttttacatcttcctat-aaaacttttttcaaagaaaacacaaaaaactacactccaaattcttatgttttagt 32624015  T
Q  655 tgttcttaataa 666  Q
    | ||||||||||    
T  32624014 t-ttcttaataa 32624004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 555 - 681
Target Start/End: Original strand, 33369605 - 33369727
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||| | ||||||| |||||||| ||  ||| |||||||| ||||||||||||| ||||||||||||    
T  33369605 cataaccaatag-ccaatgaaaattgtttttacatct-catataaaa-ctttttccaaagaaaacacaaaaaactatactccaaatttttatgttttagt 33369701  T
Q  655 tgttcttaataagtgtaaattttattt 681  Q
    | |||||||||||||| | ||||||||    
T  33369702 t-ttcttaataagtgtgatttttattt 33369727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 20602963 - 20603031
Alignment:
Q  50 gcatctcatcttttctgctattcatataagcttcatcatctcaatttctttccaactaactcttcatct 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||| || | |||||||||||||||||||    
T  20602963 gcatctcatcttttctgctattcatataagcttcatcgtctcaaattttgtccaactaactcttcatct 20603031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 6785510 - 6785621
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||| ||| |||||||||||  ||  ||| |||||||| |||||||| |||||||||||||||||    
T  6785510 cataaccaatag-ccaatgaaaattgtttttacatcttcatat-aaaactttttcaaaagaaaacacaaaaaactatactcc-aattcttatgttttagt 6785606  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  6785607 t-ttcttaataagtgt 6785621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 39555693 - 39555581
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||||||||||||||| |||| |||||||||| | ||  ||| |||||||  |||||||||||||||||||||||| |    
T  39555693 cataaccaatag-ccaatgaaaattgtttttacatctttctat-aaaacttttttcaaagaaaacacaaaaacctatactccaaattcttatgttttaat 39555596  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  39555595 t-ttcttaataagtgt 39555581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 555 - 668
Target Start/End: Complemental strand, 42965922 - 42965813
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||  ||||||| ||  ||| |||||||| || ||| |||||| ||||||||||||    
T  42965922 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa--tttttccaaagaaaacacaaaaaactaaacttcaaatttttatgttttagt 42965826  T
Q  655 tgttcttaataagt 668  Q
    | ||||||||||||    
T  42965825 t-ttcttaataagt 42965813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 555 - 655
Target Start/End: Original strand, 35691447 - 35691545
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||| | |||||||||||||||| ||||||||| |||||| | ||  ||| |||||||| ||||||||||||||||||||||||||    
T  35691447 cataaccaatag-ccaataaaaattgtttttacatctccctataaaa-cttttttcaaagaaaacacaaaaaattatactccaaattcttatgttttagt 35691544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 555 - 646
Target Start/End: Complemental strand, 12449074 - 12448985
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttat 646  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||||||||| | ||  ||| |||||||| ||||||||||||||||||    
T  12449074 cataaccaat-ggccaatgaaaattgtttttacatcttcctat-aaaacttttttcaaagaaaacacaaaaaactatactccaaattcttat 12448985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 567 - 703
Target Start/End: Complemental strand, 7468059 - 7467924
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagta-tactccaaattcttatgttttagttgttcttaata 665  Q
    |||||||| |||||| ||||||||||||| | |||||||||||| ||  ||| |||||||| || |||| |||||||||||||||||||| |||||||||    
T  7468059 gccaatgaaaattgtatttacatcttcct-ttaaaactttttccaaagaaaacacaaaaaattattacttcaaattcttatgttttagtt-ttcttaata 7467962  T
Q  666 agtgtaaattttatttgttggctataatttgggacgga 703  Q
    ||||    |||| ||| |||  ||||||||||||||||    
T  7467961 agtgattttttttttttttgcttataatttgggacgga 7467924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 712
Target Start/End: Complemental strand, 3875113 - 3874973
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||| | |||||||||||||| ||||||| ||||||||||  |||| ||| ||| |||| |||||| ||||||||||||||||| || ||||||||||    
T  3875113 gccaataaaaattgtttttacatattcctat-aaaacttttt--caaaaaaaaacacaaaactatacttcaaattcttatgttttactt-ttcttaataa 3875018  T
Q  667 gtgtaaattttatttgttggc-tataatttgggacggaagggagtat 712  Q
    ||||  ||||| ||| ||||| |||||||| |||||| |||||||||    
T  3875017 gtgt-gatttttttttttggcttataatttaggacgg-agggagtat 3874973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 45226192 - 45226304
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| | ||||| |||||||||||| ||||||||| |||||||||| | ||  ||| ||| |||| ||||||| ||||| ||||||||||||    
T  45226192 cataaccaatagtc-aatgaaaattgtttttacgtcttcctat-aaaacttttttcaaagaaaatacataaaactatactctaaattattatgttttagt 45226289  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  45226290 t-ttcttaataagtgt 45226304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 52984998 - 52985099
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||||||||  | ||| ||| |||| ||  ||| |||||||| |||||||||||||||||||| |||||| ||||||||||    
T  52984998 gccaatgaaaattgtttttacatcttcccgtgaaa-cttattccaaagaaaacacaaaaaactatactccaaattcttatgtattagtt-ttcttaataa 52985095  T
Q  667 gtgt 670  Q
    ||||    
T  52985096 gtgt 52985099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 581 - 702
Target Start/End: Original strand, 1820493 - 1820613
Alignment:
Q  581 tttttacatcttcctataaaaactttttcccaaagaaagacaa-aaaagtatactccaaattcttatgttttagttgttcttaataagtgtaaattttat 679  Q
    ||||||||||||||||||||| |||||||| ||| ||  |||| |||| |||| |||||||||||||||||||||| ||||||||||| |||  |||| |    
T  1820493 tttttacatcttcctataaaa-ctttttccaaaaaaagcacaataaaactatattccaaattcttatgttttagtt-ttcttaataagagtatttttttt 1820590  T
Q  680 ttgttggctataatttgggacgg 702  Q
    |  |||  |||||||||||||||    
T  1820591 tatttgcttataatttgggacgg 1820613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 13136660 - 13136549
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||    |||||   |||||||  |||||||| ||||||||||||||||||||||||     
T  13136660 cataaccaatag-ccaatggaaattgtttttacatcttcctataattttttttt---aaagaaaacacaaaaaactatactccaaattcttatgttttaa 13136565  T
Q  654 ttgttcttaataagtgt 670  Q
    || ||||||||||||||    
T  13136564 tt-ttcttaataagtgt 13136549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 32983277 - 32983167
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaag-aaagacaaaaaagtatactccaaattcttatgttttag 653  Q
    ||||||||||  |||||||| |||||||||||||||||| ||| |||||||||  |||||| ||| |||||||| |||||| | |||| |||||||||||    
T  32983277 cataaccaat--gccaatgaaaattgtttttacatcttcttat-aaaactttt--ccaaagaaaacacaaaaaactatacttccaatttttatgttttag 32983183  T
Q  654 ttgttcttaataagtgt 670  Q
    || ||||||||||||||    
T  32983182 tt-ttcttaataagtgt 32983167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 567 - 672
Target Start/End: Complemental strand, 46818598 - 46818495
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| ||||||||||| |||||||||| |||||||||| | ||  ||| |||||||| ||||||  |||||||||||||||  || ||||||||||    
T  46818598 gccaatgaaaattgtttttatatcttcctat-aaaacttttttcaaagaaaatacaaaaaactatactttaaattcttatgtttttctt-ttcttaataa 46818501  T
Q  667 gtgtaa 672  Q
    ||||||    
T  46818500 gtgtaa 46818495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 703
Target Start/End: Complemental strand, 43667410 - 43667266
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||| ||||||||| |||||||||||| ||||||||| |||||||||| | ||  ||| |||||||| ||||||  |||||||||||| ||| |    
T  43667410 cataaccaat-ggccaatgaaaattgtttttacgtcttcctat-aaaacttttttcaaagaaaacacaaaaaattatactttaaattcttatgtcttaat 43667313  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataatttgggacgga 703  Q
    | |||||||||| |||  ||||| ||| |||  |||||||| |||||||    
T  43667312 t-ttcttaataaatgt-gatttttttttttgtttataatttaggacgga 43667266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 670
Target Start/End: Original strand, 33431614 - 33431725
Alignment:
Q  556 ataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    ||||||||||| ||||||| |||||||||| |||| |||||||||| ||||||   ||| ||| |||||||| ||| || |||||||||||| | |||||    
T  33431614 ataaccaatag-ccaatgaaaattgtttttccatcctcctataaaa-cttttttaaaaaaaaacacaaaaaactatgctacaaattcttatgatctagtt 33431711  T
Q  656 gttcttaataagtgt 670  Q
     ||||||||||||||    
T  33431712 -ttcttaataagtgt 33431725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 703
Target Start/End: Complemental strand, 44148932 - 44148797
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| ||||||||||||||||||| ||  |||||| |||| ||  ||| |||||||| ||| || |||||||||||| ||||||| ||| ||||||    
T  44148932 gccaatgaaaattgtttttacatcttcccat-gaaacttattccaaagaaaacacaaaaaactatgctacaaattcttatgctttagtt-ttcgtaataa 44148835  T
Q  667 gtgtaaattttatttgttggc-tataatttgggacgga 703  Q
    |||| | |||| ||| || || |||||||| |||||||    
T  44148834 gtgtgatttttgtttttttgcttataatttaggacgga 44148797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 713
Target Start/End: Complemental strand, 24728723 - 24728578
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaag-tatactccaaattcttatgttttagttgttcttaata 665  Q
    |||||||| ||||||||||||||||||| || ||| ||| |||  ||  ||| ||||||||  ||| || |||||||||||||||||||| |||||||||    
T  24728723 gccaatgaaaattgtttttacatcttcccatgaaa-cttattcgaaagaaaacacaaaaaaactatgctacaaattcttatgttttagtt-ttcttaata 24728626  T
Q  666 agtgtaaattttatttgttggc-tataatttgggacggaagggagtatt 713  Q
    ||||| | |||| ||| || || |||||||| |||||| ||||||||||    
T  24728625 agtgtgatttttgtttttttgcttataatttaggacgg-agggagtatt 24728578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 655
Target Start/End: Complemental strand, 39932668 - 39932581
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    |||||| | ||||||||||| |||||| ||||||| ||| ||   ||| ||| |||||||| |||||||||||||||||||||||||||    
T  39932668 gccaataaaaattgtttttatatcttcttataaaa-cttattaaaaaaaaaacacaaaaaactatactccaaattcttatgttttagtt 39932581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 3076360 - 3076461
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||| |||||||||||||| || ||||||| |||| ||  ||| |||||||| ||| || |||||||||||| |||| || ||||||||||    
T  3076360 gccaatgaaaattatttttacatcttcccat-aaaacttattccaaataaaacacaaaaaactatgctacaaattcttatgctttaatt-ttcttaataa 3076457  T
Q  667 gtgt 670  Q
    ||||    
T  3076458 gtgt 3076461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 670
Target Start/End: Original strand, 4672927 - 4672997
Alignment:
Q  599 aaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagtgt 670  Q
    |||||||||| | ||  ||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  4672927 aaaacttttttcaaagaaaatacaaaaaactatactccaaattcttatattttagtt-ttcttaataagtgt 4672997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 40718743 - 40718844
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||| |||| |||| ||||||| |||||| | ||  ||| |||||||| ||||||||||||| |||| |||||||| ||| ||||||    
T  40718743 gccaatgaaaattgtttctacaacttcatataaaa-cttttttcaaagaaaacacaaaaaactatactccaaatttttatattttagtt-ttcgtaataa 40718840  T
Q  667 gtgt 670  Q
    ||||    
T  40718841 gtgt 40718844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 655
Target Start/End: Original strand, 46543039 - 46543134
Alignment:
Q  558 aaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttagtt 655  Q
    ||||||||| ||||||  |||||||||| ||||||||||||||   ||||||  |||||||  |||||||| ||||||||||||| |||||||||||||    
T  46543039 aaccaatag-ccaatggaaattgttttttcatcttcctataaattttttttc--aaagaaaacacaaaaaactatactccaaatttttatgttttagtt 46543134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 601
Target Start/End: Complemental strand, 47600135 - 47600101
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaa 601  Q
    |||||||| ||||||||||||||||||||||||||    
T  47600135 gccaatgaaaattgtttttacatcttcctataaaa 47600101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 601
Target Start/End: Complemental strand, 5858477 - 5858433
Alignment:
Q  556 ataaccaataggccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  5858477 ataaccaatag-ccaatgaaaattgtttttatatcttcctataaaa 5858433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 5950505 - 5950538
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  5950505 ccaatgaaaattgtttttacatcttcctataaaa 5950538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 7397772 - 7397805
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  7397772 ccaatgaaaattgtttttacatcttcctataaaa 7397805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 8889792 - 8889759
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  8889792 ccaatgaaaattgtttttacatcttcctataaaa 8889759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 13351746 - 13351779
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  13351746 ccaatgaaaattgtttttacatcttcctataaaa 13351779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 16688202 - 16688235
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  16688202 ccaatgaaaattgtttttacatcttcctataaaa 16688235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 9e-32; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 555 - 712
Target Start/End: Complemental strand, 11082352 - 11082198
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  11082352 cataaccaatag-ccaatgaaaattgtttttacatctccctataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagt 11082255  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttgggacggaagggagtat 712  Q
    | |||||||||||||| | |||| ||| || || ||||||||||||||| |||||||||    
T  11082254 t-ttcttaataagtgttatttttgtttttttgcttataatttgggacgg-agggagtat 11082198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 555 - 712
Target Start/End: Original strand, 21542472 - 21542626
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  21542472 cataaccaatag-ccaataaaaattgtttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagt 21542569  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttgggacggaagggagtat 712  Q
    | |||||||||||||| | |||| ||| || || ||||||||||||||| |||||||||    
T  21542570 t-ttcttaataagtgtgatttttgtttttttgcttataatttgggacgg-agggagtat 21542626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 555 - 703
Target Start/End: Complemental strand, 35129162 - 35129015
Alignment:
Q  555 cataaccaataggccaatgagaattgttt-ttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||  ||||||| |||||||| |||||||||||||||||| |||||||| ||  ||| |||||||| |||||||||||||||||||||||||    
T  35129162 cataaccaataa-ccaatgaaaattgtttattacatcttcctataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttag 35129065  T
Q  654 ttgttcttaataagtgtaaattttatttgttggc-tataatttgggacgga 703  Q
    || |||||||||||||| | |||| ||| || || ||||||||| ||||||    
T  35129064 tt-ttcttaataagtgtgatttttgtttttttgcttataatttgagacgga 35129015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 703
Target Start/End: Complemental strand, 34177748 - 34177602
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaag-aaagacaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||||| |||||||||||||||| |||||  ||| ||||| |||||| ||| |||||||| |||| |||||||||||||||||||     
T  34177748 cataaccaatag-ccaatgaaaattgtttttacatctccctat--aaatttttttccaaagaaaacacaaaaaactatattccaaattcttatgttttaa 34177652  T
Q  654 ttgttcttaataagtgtaaattttatttgttggc-tataatttgggacgga 703  Q
    || |||||||||||||| | |||| ||| || || ||||||||| ||||||    
T  34177651 tt-ttcttaataagtgtgatttttgtttttttgcttataatttgagacgga 34177602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 555 - 712
Target Start/End: Complemental strand, 7274982 - 7274828
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||||||||||||||||| || ||| ||| |||| ||  ||| |||||||| ||| || |||||||||||||||||||    
T  7274982 cataaccaatag-ccaatgaaaattgtttttacatcttcccatgaaa-cttattccaaagaaaatacaaaaaactatgctacaaattcttatgttttagt 7274885  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttgggacggaagggagtat 712  Q
    | |||||||||||||| | |||| ||| || || |||||||| |||||| |||||||||    
T  7274884 t-ttcttaataagtgtgatttttgtttttttgcttataatttaggacgg-agggagtat 7274828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 555 - 666
Target Start/End: Complemental strand, 12461536 - 12461428
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||||||||| ||  ||||||||   |||||| |||| |||||||||| ||||||||||    
T  12461536 cataaccaatag-ccaatgaaaattgtttttacatctttctataaaaacttatt-tcaaagaaaataaaaaaactatattccaaattctcatgttttagt 12461439  T
Q  655 tgttcttaataa 666  Q
    | ||||||||||    
T  12461438 t-ttcttaataa 12461428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 567 - 666
Target Start/End: Complemental strand, 3095815 - 3095719
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaag-aaagacaaaaaagtatactccaaattcttatgttttagttgttcttaata 665  Q
    |||||||| |||||||||||||||||||||| |||||||||  |||||| ||| |||||||| ||||||||||||| ||||| ||||||| |||||||||    
T  3095815 gccaatgaaaattgtttttacatcttcctat-aaaactttt--ccaaagaaaacacaaaaaactatactccaaatttttatgctttagtt-ttcttaata 3095720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 666
Target Start/End: Complemental strand, 30794288 - 30794191
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| || ||||||||||||||||||| ||||||| |||| ||  ||| | |||||| |||||| ||||||||||| |||||||| ||||||||||    
T  30794288 gccaatgaaaaatgtttttacatcttcctat-aaaacttattccaaataaaacataaaaaattatacttcaaattcttatattttagtt-ttcttaataa 30794191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 670
Target Start/End: Complemental strand, 17751788 - 17751739
Alignment:
Q  620 acaaaaaagtatactccaaattcttatgttttagttgttcttaataagtgt 670  Q
    |||||||| |||||||||||||||||| ||||| || ||||||||||||||    
T  17751788 acaaaaaactatactccaaattcttatattttaatt-ttcttaataagtgt 17751739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 5300695 - 5300662
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  5300695 ccaatgaaaattgtttttacatcttcctataaaa 5300662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 16013527 - 16013494
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  16013527 ccaatgaaaattgtttttacatcttcctataaaa 16013494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 16524443 - 16524476
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  16524443 ccaatgaaaattgtttttacatcttcctataaaa 16524476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 555 - 706
Target Start/End: Original strand, 6686438 - 6686588
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaag-aaagacaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||    
T  6686438 cataaccaatag-ccaatgaaaattgtttttacatcttcctat-aaaacttttttccaaagaaaacacaaaaaactatactccaaattcttatgttttag 6686535  T
Q  654 ttgttcttaataagtgtaaattttatttgttggc-tataatttgggacggaagg 706  Q
    || |||||||||| ||| | |||| ||| || || |||||||||| ||||||||    
T  6686536 tt-ttcttaataaatgtgatttttgtttttttgcttataatttggaacggaagg 6686588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 555 - 712
Target Start/End: Original strand, 42273701 - 42273853
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  42273701 cataaccaatag-ccaatgaaaattgtttttacatcttcttataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagt 42273798  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataatttgggacggaagggagtat 712  Q
    | ||||||||||||||  ||||| ||| |||  ||||||||||||||| |||||||||    
T  42273799 t-ttcttaataagtgt-gatttttttttttgcttataatttgggacgg-agggagtat 42273853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 555 - 712
Target Start/End: Original strand, 20644068 - 20644223
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  20644068 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaattatactccaaattcttatgttttagt 20644165  T
Q  655 tgttcttaataagtgtaa--attttatttgttggctataatttgggacggaagggagtat 712  Q
    | |||||||||||||| |   |||| ||| |||  ||||||||||||||| |||||||||    
T  20644166 t-ttcttaataagtgtgattttttttttttttgcttataatttgggacgg-agggagtat 20644223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 555 - 703
Target Start/End: Complemental strand, 43590069 - 43589923
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||  ||  ||| |||||||| ||||||||||||||||||||||||||    
T  43590069 cataaccaatag-ccaatgaaaattgtttttacatctccctataaaa-ctttttcaaaagaaaacacaaaaaactatactccaaattcttatgttttagt 43589972  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttgggacgga 703  Q
    | |||||||||||||| | |||| ||| || || |||||||| |||||||    
T  43589971 t-ttcttaataagtgtgatttttgtttttttgcttataatttaggacgga 43589923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 555 - 677
Target Start/End: Original strand, 20039156 - 20039275
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||| | ||||| |||||||||||||||||||| |||||||  |||||||  |||||||| |||||||||||||||||||||||||    
T  20039156 cataaccaatag-ccaataaaaattggttttacatcttcctataaaacctttttc--aaagaaaacacaaaaaattatactccaaattcttatgttttag 20039252  T
Q  654 ttgttcttaataagtgtaaatttt 677  Q
    || |||||||||||||| ||||||    
T  20039253 tt-ttcttaataagtgtgaatttt 20039275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 567 - 655
Target Start/End: Complemental strand, 37522685 - 37522598
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    |||||||| |||||||||||||||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||||||||||||||||    
T  37522685 gccaatgaaaattgtttttacatcttcctataaaa-ctttttccaaaaaaaacacaaaaaactatactccaaattcttatgttttagtt 37522598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 555 - 706
Target Start/End: Complemental strand, 11261991 - 11261843
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||||||||| | ||  ||| |||||||| ||||||||||||||| |||| |||||    
T  11261991 cataaccaatag-ccaatgaaaattgtttttacatcttcctat-aaaacttttttcaaagaaaacacaaaaaattatactccaaattctcatgtgttagt 11261894  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataatttgggacggaagg 706  Q
    | | |||||||||||| | |||| ||| |||  |||||||| ||||||||||    
T  11261893 t-tacttaataagtgtgattttttttttttgcttataatttaggacggaagg 11261843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 570 - 703
Target Start/End: Complemental strand, 37562855 - 37562725
Alignment:
Q  570 aatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttagttgttcttaataagt 668  Q
    ||||| |||||||||||||||||||||||||| |||||||| ||| |||  |||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  37562855 aatgaaaattgtttttacatcttcctataaaa-ctttttccaaaaaaaaacacaaaaaactatactccaaattcttatgttttagtt-ttcttaataagt 37562758  T
Q  669 gtaaattttatttgttggctataatttgggacgga 703  Q
    || |  ||| ||| |||  ||||||||||||||||    
T  37562757 gtga--ttttttttttgcttataatttgggacgga 37562725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 34425395 - 34425496
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||| ||||||||||| |||||| | ||  ||| |||||||| |||||| |||||||||||||||||||| ||||||||||    
T  34425395 gccaatgaaaattgtttttacatattcctataaaa-cttttttcaaagaaaacacaaaaaactatacttcaaattcttatgttttagtt-ttcttaataa 34425492  T
Q  667 gtgt 670  Q
    ||||    
T  34425493 gtgt 34425496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 712
Target Start/End: Complemental strand, 12792830 - 12792740
Alignment:
Q  620 acaaaaaagtatactccaaattcttatgttttagttgttcttaataagtgtaaattttatttgttggctataatttgggacggaagggagtat 712  Q
    |||||||| |||||||||| |||||||||||||||| || ||||||||||| | |||| ||| |||  |||||||| |||||| |||||||||    
T  12792830 acaaaaaactatactccaatttcttatgttttagtt-tttttaataagtgtgattttttttttttgcttataatttaggacgg-agggagtat 12792740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 569 - 712
Target Start/End: Original strand, 25840931 - 25841072
Alignment:
Q  569 caatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagt 668  Q
    |||||| ||||||||||||||||||| ||  |||||| |||| ||  ||| |||||||| ||| || |||||| ||||| ||||||| ||||||||||||    
T  25840931 caatgaaaattgtttttacatcttcccat-gaaacttattccaaagaaaacacaaaaaactatgctacaaatttttatgctttagtt-ttcttaataagt 25841028  T
Q  669 gtaaattttatttgttggc-tataatttgggacggaagggagtat 712  Q
    || | |||| ||| || || |||||||| |||| |||||||||||    
T  25841029 gtgatttttgtttttttgcttataatttaggac-gaagggagtat 25841072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 555 - 665
Target Start/End: Complemental strand, 38130223 - 38130113
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaa---agtatactccaaattcttatgtttt 651  Q
    |||||||||||| ||||||| |||| ||||||||| ||||||| |||||||||||  ||  ||| |||||||   | |||| ||||||||||||||||||    
T  38130223 cataaccaatag-ccaatgaaaattatttttacatattcctat-aaaactttttctaaagaaaacacaaaaaactactatattccaaattcttatgtttt 38130126  T
Q  652 agttgttcttaata 665  Q
    |||| |||||||||    
T  38130125 agtt-ttcttaata 38130113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 555 - 645
Target Start/End: Original strand, 32111056 - 32111144
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattctta 645  Q
    |||||||||||| | ||||| ||||||||||||||||||||||  ||||||||| | ||  ||| |||||| | |||||||||||||||||    
T  32111056 cataaccaatagtc-aatgaaaattgtttttacatcttcctat-gaaacttttttcaaagaaaacacaaaacattatactccaaattctta 32111144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 700
Target Start/End: Complemental strand, 9957476 - 9957400
Alignment:
Q  623 aaaaagtatactccaaattcttatgttttagttgttcttaataagtgtaaattttatttgttggctataatttgggac 700  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||||| | |||| ||| ||   |||||||||||||    
T  9957476 aaaaactatactccaaattctcatgttttagtt-ttcttaataagtgtgattttttttttttacttataatttgggac 9957400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 652
Target Start/End: Complemental strand, 42104344 - 42104262
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgtttta 652  Q
    |||||||| ||||||||||||||||||| || ||| ||| |||| ||||| | ||| |||| ||||||||||||||||||||||||    
T  42104344 gccaatgaaaattgtttttacatcttcccatgaaa-cttgttcc-aaagaga-acacaaaattatactccaaattcttatgtttta 42104262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 666
Target Start/End: Original strand, 19413206 - 19413303
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| ||||||||||||||||||| || ||||||| || | ||  ||| |||||||| ||| || |||||||||||  ||||||| ||||||||||    
T  19413206 gccaatgaaaattgtttttacatcttcccat-aaaacttatttcaaagaaaacacaaaaaactatgctacaaattcttatactttagtt-ttcttaataa 19413303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 646
Target Start/End: Complemental strand, 5984214 - 5984126
Alignment:
Q  556 ataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttat 646  Q
    ||||||||||| | ||||| |||||||||||||| || |||| ||||||| |||| ||  ||| |||||||| ||||||| ||||||||||    
T  5984214 ataaccaatagtc-aatgaaaattgtttttacatatttctat-aaaacttattccaaagaaaacacaaaaaactatactctaaattcttat 5984126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 668
Target Start/End: Complemental strand, 12912389 - 12912292
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaaactttttcccaaaga-aagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    ||||||| ||||||||||||||||||||||||||  | |||  |||||| || |||||||| |||| ||||| | | |||||||||||| ||||||||||    
T  12912389 ccaatgaaaattgtttttacatcttcctataaaacttattt--caaagataacacaaaaaactatattccaactac-tatgttttagtt-ttcttaataa 12912294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 601
Target Start/End: Original strand, 32017757 - 32017802
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaa 601  Q
    |||||||||||| | ||||| ||||||||||||||||||||||||||    
T  32017757 cataaccaatagac-aatgaaaattgtttttacatcttcctataaaa 32017802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 5369126 - 5369093
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  5369126 ccaatgaaaattgtttttacatcttcctataaaa 5369093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 8225325 - 8225358
Alignment:
Q  413 gtactccctccgtcccataatatatgcaaaaaaa 446  Q
    |||||||||||||||||||||||| |||||||||    
T  8225325 gtactccctccgtcccataatataagcaaaaaaa 8225358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 10154023 - 10153990
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  10154023 ccaatgaaaattgtttttacatcttcctataaaa 10153990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 671
Target Start/End: Complemental strand, 43454416 - 43454317
Alignment:
Q  570 aatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagtg 669  Q
    ||||| |||||||||||||| ||||||||||| ||| |  | ||  ||| |||||||| |||| | ||| ||||||||||||| || |||||||||||||    
T  43454416 aatgaaaattgtttttacatattcctataaaa-cttatgacaaagaaaacacaaaaaactatatttcaagttcttatgttttaatt-ttcttaataagtg 43454319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 555 - 703
Target Start/End: Original strand, 2229299 - 2229445
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  2229299 cataaccaatag-ccaataaaaattgtttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagt 2229396  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttgggacgga 703  Q
    | |||||||||||||| | |||| ||| || || ||||||||||||||||    
T  2229397 t-ttcttaataagtgtgatttttgtttttttgcttataatttgggacgga 2229445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 555 - 703
Target Start/End: Original strand, 47867931 - 47868077
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  47867931 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagt 47868028  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttgggacgga 703  Q
    | |||||||||||||| | |||| ||| || || |||||||| |||||||    
T  47868029 t-ttcttaataagtgtgatttttgtttttttgcttataatttaggacgga 47868077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 20281643 - 20281755
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  20281643 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagt 20281740  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  20281741 t-ttcttaataagtgt 20281755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 555 - 714
Target Start/End: Original strand, 4058767 - 4058920
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||| |||||| | ||  ||| |||||||| ||||||||||||||||||||||||||    
T  4058767 cataaccaataa-ccaatgaaaattgtttttacatcttcctataaaa-cttttttcaaagaaaacacaaaaaactatactccaaattcttatgttttagt 4058864  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataatttgggacggaagggagtatta 714  Q
    | |||||||||| ||| |  ||| ||| |||  ||||||||||||||| |||||||||||    
T  4058865 t-ttcttaataaatgtga--ttttttttttgcttataatttgggacgg-agggagtatta 4058920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 555 - 703
Target Start/End: Original strand, 26916377 - 26916522
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||  ||| ||||||||  |||||||||||||||||||||||||    
T  26916377 cataaccaatag-ccaataaaaattgtttttacatcttcctataaaa-cttttttcaaagaaaacacaaaaaaccatactccaaattcttatgttttagt 26916474  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataatttgggacgga 703  Q
    | |||||||||||||| | ||||  || |||  ||||||||||||||||    
T  26916475 t-ttcttaataagtgtgattttttatttttgtttataatttgggacgga 26916522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 20716232 - 20716344
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||| ||  |||| ||||| | ||||||||||||||||||||||||||    
T  20716232 cataaccaatag-ccaatgaaaattgtttttacatctttctataaaa-ctttttccaaacaaaagtcaaaagactatactccaaattcttatgttttagt 20716329  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  20716330 t-ttcttaataagtgt 20716344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 567 - 712
Target Start/End: Original strand, 39078220 - 39078362
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||||||| ||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  39078220 gccaatgaaaattgtttttacatcttc-tataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagtt-ttcttaataa 39078316  T
Q  667 gtgtaaattttatttgttggc-tataatttgggacggaagggagtat 712  Q
    |||| | |||| ||| ||  | ||||||||||||||| |||||||||    
T  39078317 gtgtgattttttttttttttcttataatttgggacgg-agggagtat 39078362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 29203558 - 29203670
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||  ||| |  |||||||  |||||||| |||||||||||||||||||||||||    
T  29203558 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaaaaatttgc--aaagaaaacacaaaaaattatactccaaattcttatgttttag 29203654  T
Q  654 ttgttcttaataagtgt 670  Q
    || ||||||||||||||    
T  29203655 tt-ttcttaataagtgt 29203670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 7654680 - 7654781
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| ||||||||||| |||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  7654680 gccaatgaaaattgtttttatatcttcctataaaa-ctttttccaaagaaaacacaaaaaactatactccaaatttttatgttttagtt-ttcttaataa 7654777  T
Q  667 gtgt 670  Q
    ||||    
T  7654778 gtgt 7654781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 14332812 - 14332924
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||| |||||||| ||  ||| ||||||||  ||| |||||||||||||||||||||    
T  14332812 cataaccaat-ggccaataaaaattgtttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaaccatattccaaattcttatgttttagt 14332909  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  14332910 t-ttcttaataagtgt 14332924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 10069749 - 10069861
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||||| |||||| | ||  ||| |||||||| |||||| |||||||||||||||||||    
T  10069749 cataaccaatag-ccaatgaaaattgtttttacatctttctataaaa-cttttttcgaagaaaatacaaaaaactatactacaaattcttatgttttagt 10069846  T
Q  655 tgttcttaataagtgt 670  Q
    | || |||||||||||    
T  10069847 t-ttattaataagtgt 10069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 567 - 670
Target Start/End: Complemental strand, 41414700 - 41414599
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||| | |||||||||||||||||||||||||| |||||| | ||  ||| |||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  41414700 gccaataaaaattgtttttacatcttcctataaaa-cttttttcaaagaaaacacaaaaaactatactccatattcttatgttttagtt-ttcttaataa 41414603  T
Q  667 gtgt 670  Q
    ||||    
T  41414602 gtgt 41414599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 567 - 667
Target Start/End: Complemental strand, 16604935 - 16604837
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| ||||||||| |||||||||||||||| |||||| | ||  ||| |||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  16604935 gccaatgaaaattgttttaacatcttcctataaaa-cttttttcaaagaaaacacaaaaaactatactctaaattcttatgttttagtt-ttcttaataa 16604838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 555 - 666
Target Start/End: Original strand, 24940417 - 24940525
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||  |||| || |||||||||||||||||| ||||||| |||||||| ||  ||| |||||||| ||||||||||||||||| ||||||||    
T  24940417 cataaccaataa-ccaacgaaaattgtttttacatcttcttataaaa-ctttttccaaagaaaatacaaaaaactatactccaaattcttacgttttagt 24940514  T
Q  655 tgttcttaataa 666  Q
    | ||||||||||    
T  24940515 t-ttcttaataa 24940525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 567 - 666
Target Start/End: Original strand, 55580733 - 55580830
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||||||||||| | |||||||||| ||  ||| | |||||| |||||||||||||||||||||| |||| ||||||||||    
T  55580733 gccaatgaaaattgtttttacatcttcctat-acaactttttccaaagaaaacaaaaaaaactatactccaaattcttatgtttcagtt-ttcttaataa 55580830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 584 - 677
Target Start/End: Original strand, 16473828 - 16473919
Alignment:
Q  584 ttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagtgtaaatttt 677  Q
    |||||||||||||||||| |||||| | ||  ||| |||||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  16473828 ttacatcttcctataaaa-cttttttcaaagaaaacacaaaaaactatactccaaattcttatattttagtt-ttcttaataagtgtaattttt 16473919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 568 - 670
Target Start/End: Complemental strand, 28669089 - 28668989
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaaactttttcccaaag-aaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    ||||||| |||||||||||||| ||||||||||| |||||  | |||| ||| |||||||| ||||||  ||||||||||||||||||| ||||||||||    
T  28669089 ccaatgaaaattgtttttacattttcctataaaacctttt--ctaaagaaaacacaaaaaactatactttaaattcttatgttttagtt-ttcttaataa 28668993  T
Q  667 gtgt 670  Q
    ||||    
T  28668992 gtgt 28668989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 56318170 - 56318058
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| | ||||| |||||||||||||||||||||| ||| |||||||| ||  ||| ||||||||  |||||| |||||||||||||||| |    
T  56318170 cataaccaatag-ctaatgaaaattgtttttacatcttcctat-aaacctttttccaaagaaaacacaaaaaaccatactctaaattcttatgttttaat 56318073  T
Q  655 tgttcttaataagtgt 670  Q
    | || |||||||||||    
T  56318072 t-tttttaataagtgt 56318058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 44162180 - 44162223
Alignment:
Q  49 tgcatctcatcttttctgctattcatataagcttcatcatctca 92  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  44162180 tgcatctcatcttttctgctattcatataagcttcatcacctca 44162223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 670
Target Start/End: Complemental strand, 12002670 - 12002621
Alignment:
Q  620 acaaaaaagtatactccaaattcttatgttttagttgttcttaataagtgt 670  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  12002670 acaaaaaactatactccaaattcttatgttttagtt-ttcttaataagtgt 12002621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 670
Target Start/End: Complemental strand, 17794630 - 17794529
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaag-aaagacaaaaaagtatactccaaattcttatgttttagttgttcttaata 665  Q
    |||||||| ||||||||||||||||||||||||||  ||| |  ||||| |||  ||||||| |||||| ||||||||| | |||||||| |||||||||    
T  17794630 gccaatgaaaattgtttttacatcttcctataaaa--tttatttcaaagaaaacgcaaaaaactatacttcaaattctttttttttagtt-ttcttaata 17794534  T
Q  666 agtgt 670  Q
    |||||    
T  17794533 agtgt 17794529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 670
Target Start/End: Complemental strand, 48793717 - 48793618
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| ||||||||||||||||||| ||  |||||| || ||||||||| ||| |||| ||| || |||||||||||| ||||||| ||||||||||    
T  48793717 gccaatgaaaattgtttttacatcttcccat-gaaacttatt-ccaaagaaa-acacaaaactatgctacaaattcttatgctttagtt-ttcttaataa 48793622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 670
Target Start/End: Complemental strand, 50080493 - 50080444
Alignment:
Q  620 acaaaaaagtatactccaaattcttatgttttagttgttcttaataagtgt 670  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  50080493 acaaaaaattatactcaaaattcttatgttttagtt-ttcttaataagtgt 50080444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 681
Target Start/End: Complemental strand, 52535630 - 52535575
Alignment:
Q  624 aaaagtatactccaaattcttatgttttagttgttcttaataagtgtaaattttattt 681  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  52535630 aaaactatactccaaattcttatgctttagtt-ttcttaataagtgt-aattttattt 52535575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 42915593 - 42915694
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| ||||||||||||||||| | ||  |||||| |||| ||  ||| |||||||| ||| || ||||||||||| |||||||| || |||||||    
T  42915593 gccaatgaaaattgtttttacatctttccat-gaaacttattccaaagaaaacacaaaaaactatgctacaaattcttatattttagtt-tttttaataa 42915690  T
Q  667 gtgt 670  Q
    ||||    
T  42915691 gtgt 42915694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 670
Target Start/End: Complemental strand, 21722769 - 21722670
Alignment:
Q  569 caatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagt 668  Q
    |||||| |||| ||||||||||||||||||||| ||| || | ||  ||| | |||| | ||||||  ||||||||||||||||||| || |||||||||    
T  21722769 caatgaaaattatttttacatcttcctataaaa-cttattacaaagaaaacataaaacactatacttaaaattcttatgttttagtt-ttattaataagt 21722672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 23978203 - 23978170
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  23978203 ccaatgaaaattgtttttacatcttcctataaaa 23978170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 655
Target Start/End: Original strand, 32203277 - 32203363
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaa-gacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    ||||||| ||||||||||| ||||||| ||||||  | |||  ||||||||  |||||||| ||||||  |||||||||||||||||||    
T  32203277 ccaatgaaaattgtttttatatcttcccataaaacttattt--caaagaaacaacaaaaaactatactttaaattcttatgttttagtt 32203363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 46070610 - 46070577
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  46070610 ccaatgaaaattgtttttacatcttcctataaaa 46070577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 49080321 - 49080354
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  49080321 ccaatgaaaattgtttttacatcttcctataaaa 49080354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 34890282 - 34890170
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  34890282 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaattatactccaaattcttatgttttagt 34890185  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  34890184 t-ttcttaataagtgt 34890170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 570 - 670
Target Start/End: Complemental strand, 13144040 - 13143941
Alignment:
Q  570 aatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttagttgttcttaataagt 668  Q
    ||||| |||||||||||||||||||||||||| ||||||  ||||||||  |||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  13144040 aatgaaaattgtttttacatcttcctataaaa-ctttttttcaaagaaaacacaaaaaactatactccaaattcttatgttttagtt-ttcttaataagt 13143943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 567 - 703
Target Start/End: Original strand, 26483595 - 26483729
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||||| ||||||||| |||||| | ||  ||| |||||||| |||||| |||||||||||||||||||| ||||||||||    
T  26483595 gccaatgaaaattgtttttacatctccctataaaa-cttttttcaaagaaaacacaaaaaactatacttcaaattcttatgttttagtt-ttcttaataa 26483692  T
Q  667 gtgtaaattttatttgttggctataatttgggacgga 703  Q
    |||| | |||| ||| ||   ||||||||||||||||    
T  26483693 gtgtgatttttgtttttttcttataatttgggacgga 26483729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 570 - 670
Target Start/End: Complemental strand, 43216441 - 43216343
Alignment:
Q  570 aatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagtg 669  Q
    ||||| |||||||||||||||||||||||||| |||||| | ||  ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  43216441 aatgaaaattgtttttacatcttcctataaaa-cttttttcaaagaaaacacaaaaaactatactccaaattcttatgttttagtt-ttcttaataagtg 43216344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 36190824 - 36190936
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||||||||| | ||  ||| |||||||| ||||||| ||||||||||||||||||    
T  36190824 cataaccaatag-ccaatgaaaattgtttttacatcttcctat-aaaacttttttcaaagaaaacacaaaaaactatactctaaattcttatgttttagt 36190921  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||| ||||||    
T  36190922 t-ttcttaacaagtgt 36190936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 569 - 666
Target Start/End: Original strand, 7858593 - 7858688
Alignment:
Q  569 caatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||| |||||||||||||||||||||||||| |||||| | ||  ||| |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  7858593 caatgaaaattgtttttacatcttcctataaaa-cttttttcaaataaaacacaaaaaactatactccaaattcttatgttttagtt-ttcttaataa 7858688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 30575943 - 30575830
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||   ||  ||| |||||||| | ||||||||||| ||||||||||||    
T  30575943 cataaccaatag-ccaatgaaaattgtttttacattttcctgtaaaaactttttttaaagaaaacacaaaaaactttactccaaatttttatgttttagt 30575845  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  30575844 t-ttcttaataagtgt 30575830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 555 - 699
Target Start/End: Complemental strand, 7022511 - 7022369
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||| |||||| |||||||||||||| |||||| | ||  ||| |||||||| ||||||||||||| ||||||||||||    
T  7022511 cataaccaatag-ccaatgaaaattatttttatatcttcctataaaa-cttttttcaaagaaaacacaaaaaactatactccaaatttttatgttttagt 7022414  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttggga 699  Q
    | |||||||||| ||| | |||| ||| || || ||||||||||||    
T  7022413 t-ttcttaataaatgtgatttttgtttttttgcttataatttggga 7022369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 555 - 651
Target Start/End: Original strand, 28348662 - 28348756
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgtttt 651  Q
    |||||||||||| ||||||  |||||||||||||| ||||||||||| |||||||| ||  ||| |||||| | |||||||||||||||||||||||    
T  28348662 cataaccaatag-ccaatggaaattgtttttacatattcctataaaa-ctttttccaaagaaaatacaaaatactatactccaaattcttatgtttt 28348756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 8711929 - 8712036
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||| ||||||||||||||||| |||||||||| ||||| ||| |||||||| |||||||||||    |||||||||||    
T  8711929 cataaccaatag-ccaatgaaaattatttttacatcttcctat-aaaacttttt-ccaaaaaaacacaaaaaactatactccaaa----tatgttttagt 8712021  T
Q  655 tgttcttaataagtgt 670  Q
    | || |||||||||||    
T  8712022 t-tttttaataagtgt 8712036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 655
Target Start/End: Original strand, 35525639 - 35525735
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| | ||||| |||||||||||||||||||| |||||  |||||  |||||||| ||| |||| ||||||| ||||||||||||||||||    
T  35525639 cataaccaatagtc-aatgaaaattgtttttacatcttcctgtaaaactttttt--caaagaaa-acacaaaactatactctaaattcttatgttttagt 35525734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 567 - 670
Target Start/End: Complemental strand, 29920365 - 29920264
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaaga-aagacaaaaaagtatactccaaattcttatgttttagttgttcttaata 665  Q
    |||||||| ||||||||||||||||||| || ||| ||| |||| ||||| || |||||||| | |||| |||||||||||||||||||| |||||||||    
T  29920365 gccaatgaaaattgtttttacatcttcccatgaaa-cttattcc-aaagataacacaaaaaattgtacttcaaattcttatgttttagtt-ttcttaata 29920269  T
Q  666 agtgt 670  Q
    |||||    
T  29920268 agtgt 29920264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 666
Target Start/End: Complemental strand, 34158399 - 34158290
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaag-aaagacaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| | ||||| |||||||||||||||||||||| ||||||||||   |||| ||| |||| ||| ||||||||| ||||||||||||||     
T  34158399 cataaccaatagtc-aatgaaaattgtttttacatcttcctat-aaaacttttttttaaagaaaacacaacaaactatactccagattcttatgttttaa 34158302  T
Q  654 ttgttcttaataa 666  Q
    || ||||||||||    
T  34158301 tt-ttcttaataa 34158290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 555 - 713
Target Start/End: Original strand, 24892890 - 24893046
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttac---atcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgtttt 651  Q
    |||||||||||| ||||||| |||||||||||    ||| |||||||||| | |||||| ||  ||| |||||||| ||||||| ||||||||||||||     
T  24892890 cataaccaatag-ccaatgaaaattgtttttattatatcctcctataaaa-cgttttccaaagaaaacacaaaaaactatactctaaattcttatgttta 24892987  T
Q  652 agttgttcttaataagtgtaaattttatttgttggctataatttgggacggaagggagtatt 713  Q
    |||| ||||||||||||||   |||| ||| |||  ||||||||||||||| ||||||||||    
T  24892988 agtt-ttcttaataagtgt-gttttttttttttgcttataatttgggacgg-agggagtatt 24893046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 645
Target Start/End: Original strand, 31734178 - 31734255
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattctta 645  Q
    |||||||| ||||||||||| |||||||||| |||||||||| | ||  ||| |||||||| |||||||||||||||||    
T  31734178 gccaatgaaaattgtttttatatcttcctat-aaaacttttttcaaagaaaacacaaaaaactatactccaaattctta 31734255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 652
Target Start/End: Complemental strand, 35456121 - 35456038
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgtttta 652  Q
    |||||||| ||||||||||||||||| |||| |||||||||| | ||| ||| | |||||| |||||| |||||||||||||||||    
T  35456121 gccaatgaaaattgtttttacatctttctat-aaaacttttt-caaaaaaaacataaaaaactatacttcaaattcttatgtttta 35456038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 620 - 668
Target Start/End: Original strand, 11158676 - 11158723
Alignment:
Q  620 acaaaaaagtatactccaaattcttatgttttagttgttcttaataagt 668  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||||||    
T  11158676 acaaaaaattatattccaaattcttatgttttagtt-ttcttaataagt 11158723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 655
Target Start/End: Complemental strand, 15958019 - 15957921
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| | ||||| |||||||||||| | ||||||| |||||||||| | ||  ||| |||| ||| |||||||||| ||||||| |||||||    
T  15958019 cataaccaatag-caaatgaaaattgtttttacttattcctat-aaaacttttttcaaagaaaacacaataaactatactccaatttcttatattttagt 15957922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 655
Target Start/End: Complemental strand, 8709831 - 8709796
Alignment:
Q  620 acaaaaaagtatactccaaattcttatgttttagtt 655  Q
    |||||||| |||||||||||||||||||||||||||    
T  8709831 acaaaaaactatactccaaattcttatgttttagtt 8709796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 645
Target Start/End: Original strand, 13143827 - 13143904
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattctta 645  Q
    |||||||| ||||||||||||||||||||||  ||||||||| | |   ||| |||||||| |||||| ||||||||||    
T  13143827 gccaatgaaaattgtttttacatcttcctat-gaaacttttttcaacgaaaacacaaaaaattatacttcaaattctta 13143904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 7499584 - 7499617
Alignment:
Q  413 gtactccctccgtcccataatatatgcaaaaaaa 446  Q
    |||||||||||||||||||||||| |||||||||    
T  7499584 gtactccctccgtcccataatataagcaaaaaaa 7499617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 8745647 - 8745680
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  8745647 ccaatgaaaattgtttttacatcttcctataaaa 8745680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 17336806 - 17336839
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  17336806 ccaatgaaaattgtttttacatcttcctataaaa 17336839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 25195142 - 25195109
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  25195142 ccaatgaaaattgtttttacatcttcctataaaa 25195109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 26954488 - 26954455
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  26954488 ccaatgaaaattgtttttacatcttcctataaaa 26954455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Complemental strand, 41362403 - 41362370
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  41362403 ccaatgaaaattgtttttacatcttcctataaaa 41362370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 670
Target Start/End: Original strand, 45190700 - 45190748
Alignment:
Q  621 caaaaaagtatactccaaattcttatgttttagttgttcttaataagtgt 670  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| ||||||    
T  45190700 caaaaaactatgctccaaattcttatgttttagtt-ttcttaacaagtgt 45190748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 6110305 - 6110193
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||  ||| |||||||  ||||||||||||||||||||||||||    
T  6110305 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-ctttttccgaagaaaacacaaaaagctatactccaaattcttatgttttagt 6110208  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  6110207 t-ttcttaataagtgt 6110193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 19264154 - 19264266
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||  ||| |||||||| ||||||| ||||||||||||||||||    
T  19264154 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaa-ctttttccaaagaaaacacaaaaaattatactctaaattcttatgttttagt 19264251  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  19264252 t-ttcttaataagtgt 19264266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 555 - 677
Target Start/End: Complemental strand, 28599254 - 28599135
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||  |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  28599254 cataaccaatag-ccaatgaaaattatttttacatcttcctataaat-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagt 28599157  T
Q  655 tgttcttaataagtgtaaatttt 677  Q
    | |||||||||||||||| ||||    
T  28599156 t-ttcttaataagtgtaattttt 28599135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 555 - 715
Target Start/End: Original strand, 35517177 - 35517334
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||| |||||||||||  |||||||| |||||||| ||  ||| |||||||| ||||||||||||||||||||||||||    
T  35517177 cataaccaatag-ccaatgaaaattatttttacatctcactataaaa-ctttttccaaagaaaacacaaaaaactatactccaaattcttatgttttagt 35517274  T
Q  655 tgttcttaataagtgtaaattttatttgttggc-tataatttgggacggaagggagtattat 715  Q
    | |||||||||||||| | |||| ||| || || |||||||| |||| ||||||||||||||    
T  35517275 t-ttcttaataagtgtgatttttgtttttttgcttataatttaggac-gaagggagtattat 35517334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 3201380 - 3201492
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||| ||  ||| |||||||| ||||||  ||||||||||||||||||    
T  3201380 cataaccaatag-ccaatgaaaattgtttttacatctttctataaaa-ctttttccaaagaaaacacaaaaaactatactttaaattcttatgttttagt 3201477  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  3201478 t-ttcttaataagtgt 3201492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 45085311 - 45085423
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||| |||||| | ||  ||| |||||||| |||||||||||||||||||||||| |    
T  45085311 cataaccaat-ggctaatgaaaattgtttttacatcttcctataaaa-cttttttcaaagaaaatacaaaaaactatactccaaattcttatgttttaat 45085408  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  45085409 t-ttcttaataagtgt 45085423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 556 - 670
Target Start/End: Original strand, 11617079 - 11617190
Alignment:
Q  556 ataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    ||||||||||| ||||||| |||||||||||||||||||||| |||||||||| | ||  ||| || ||||| |||||||||||||||||||||||| ||    
T  11617079 ataaccaatag-ccaatgaaaattgtttttacatcttcctat-aaaacttttttcaaagaaaataccaaaaactatactccaaattcttatgttttaatt 11617176  T
Q  656 gttcttaataagtgt 670  Q
     ||||||||||||||    
T  11617177 -ttcttaataagtgt 11617190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 555 - 703
Target Start/End: Original strand, 45660419 - 45660567
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaa---attcttatgtttt 651  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||||||||| | ||  ||| |||||||| ||||||||||   |||||||||||||    
T  45660419 cataaccaatag-ccaatgaaaattgtttttacatcttcctat-aaaacttttttcaaagaaaacacaaaaaactatactccaaattattcttatgtttt 45660516  T
Q  652 agttgttcttaataagtgtaaattttatttgttggctataatttgggacgga 703  Q
    |||| |||||||||| ||| | |||| ||| |||  | ||||||||||||||    
T  45660517 agtt-ttcttaataaatgtgattttttttttttgcttttaatttgggacgga 45660567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 567 - 670
Target Start/End: Original strand, 12938307 - 12938408
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaag-acaaaaaagtatactccaaattcttatgttttagttgttcttaata 665  Q
    |||||||| |||||||||||||  |||||||||||  | ||||  |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  12938307 gccaatgaaaattgtttttacactttcctataaaacttatttc--aaagaaagcacaaaaaactatactccaaattcttatgttttagtt-ttcttaata 12938403  T
Q  666 agtgt 670  Q
    |||||    
T  12938404 agtgt 12938408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 570 - 675
Target Start/End: Original strand, 35022967 - 35023069
Alignment:
Q  570 aatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagtg 669  Q
    ||||| ||||||||||||||||||||||  ||||||  | ||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  35022967 aatgaaaattgtttttacatcttcctat-gaaacttact-ccaaaaaaacacaaaaaattatactccaaattcttatgttttagtt-ttcttaataagtg 35023063  T
Q  670 taaatt 675  Q
    | ||||    
T  35023064 tgaatt 35023069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 41528310 - 41528423
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaag-aaagacaaaaaagtatactccaaattcttatgttttag 653  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||   |||  ||||| ||| |||||||| |||||| ||||||||||||||||      
T  41528310 cataaccaatag-ccaatgaaaattgtttttacatcttcctataaaaaaaattt--caaagaaaacacaaaaaactatacttcaaattcttatgttttta 41528406  T
Q  654 ttgttcttaataagtgt 670  Q
     | ||||||||||||||    
T  41528407 attttcttaataagtgt 41528423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 569 - 712
Target Start/End: Original strand, 43415468 - 43415608
Alignment:
Q  569 caatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagt 668  Q
    |||||| |||||||||||||||||||||| ||||||||||   ||  ||| |||||||| |||||| ||||||||||| |||||||| |||||| |||||    
T  43415468 caatgaaaattgtttttacatcttcctat-aaaactttttttaaagaaaacacaaaaaattatacttcaaattcttatattttagtt-ttcttagtaagt 43415565  T
Q  669 gtaaattttatttgttggctataatttgggacggaagggagtat 712  Q
    || | |||| | | |||  |||||||||| |||| |||||||||    
T  43415566 gtgatttttttgttttgtttataatttggtacgg-agggagtat 43415608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 681
Target Start/End: Original strand, 25572099 - 25572222
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||  ||||||| ||||||||||||||||||| ||  |||||| |||| ||  ||| |||||||| ||| || |||||||||||| ||||||    
T  25572099 cataaccaatat-ccaatgaaaattgtttttacatcttcccat-gaaacttattccaaagaaaacacaaaaaactatgctacaaattcttatgctttagt 25572196  T
Q  655 tgttcttaataagtgtaaattttattt 681  Q
    | |||||||||||||| | ||||||||    
T  25572197 t-ttcttaataagtgtgatttttattt 25572222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 703
Target Start/End: Original strand, 8701656 - 8701801
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||  |||||| |||| ||  ||| | |||||| ||| || |||||| ||||||||||||    
T  8701656 cataaccaatag-ccaatgaaaattgtttttacatcttcccat-gaaacttattccaaagaaaacataaaaaactatgctacaaatttttatgttttagt 8701753  T
Q  655 tgttcttaataagtgtaaattttatttgttggctataatttgggacgga 703  Q
    | ||||||||||| || | |||  ||| |||  ||||||||||||||||    
T  8701754 t-ttcttaataagcgtgattttgtttttttgcttataatttgggacgga 8701801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 567 - 670
Target Start/End: Complemental strand, 9864814 - 9864712
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagac-aaaaaagtatactccaaattcttatgttttagttgttcttaata 665  Q
    |||||||| |||||||||||| |||||| ||  |||||| |||| ||  ||| || |||||| ||||||||||||||||||||||||||| |||||||||    
T  9864814 gccaatgaaaattgtttttacctcttcccat-gaaacttattccaaagaaaacacaaaaaaactatactccaaattcttatgttttagtt-ttcttaata 9864717  T
Q  666 agtgt 670  Q
    |||||    
T  9864716 agtgt 9864712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 655
Target Start/End: Complemental strand, 24204635 - 24204537
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||| |||||||| ||||||||||| ||| |||| ||  ||| |||| ||| ||||||||||||||||| ||||||||    
T  24204635 cataaccaatag-ccaatgaaaattgattttacatattcctataaaa-cttattccaaagaaaacacaataaattatactccaaattcttaggttttagt 24204538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 570 - 670
Target Start/End: Complemental strand, 35115896 - 35115797
Alignment:
Q  570 aatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagtg 669  Q
    ||||| ||||||||||||||||| ||||||||  | ||    ||| ||| |||||||| |||||||||||||||||||||||||||  ||||||||||||    
T  35115896 aatgaaaattgtttttacatctttctataaaacttattaaaaaaaaaaacacaaaaaactatactccaaattcttatgttttagtt-ctcttaataagtg 35115798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 645
Target Start/End: Original strand, 14874017 - 14874105
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattctta 645  Q
    |||||||||||| ||||||| |||| ||||||||||||||||| |||||||||| | ||  ||| |||||||| ||||||||||| |||||    
T  14874017 cataaccaatag-ccaatgaaaattatttttacatcttcctat-aaaacttttttcaaagaaaacacaaaaaactatactccaaactctta 14874105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 712
Target Start/End: Complemental strand, 29524136 - 29523993
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| ||||||||||||||||||| ||  |||||| |||| ||  ||| |||||||| ||| || |||||||||||| ||||||| ||| ||||||    
T  29524136 gccaatgaaaattgtttttacatcttcccat-gaaacttattccaaagaaaacacaaaaaattatgctacaaattcttatgctttagtt-ttcataataa 29524039  T
Q  667 gtgtaaattttatttgttggc-tataatttgggacggaagggagtat 712  Q
    |||| | |||| ||| || || |||||||| |||||| |||||||||    
T  29524038 gtgtgatttttgtttttttgcttataatttaggacgg-agggagtat 29523993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 33198737 - 33198625
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||  ||||| | |||||||||||||||||||||||||| ||| ||   ||  ||| |||||||| || | ||||||||||||| |||||||    
T  33198737 cataaccaataa-ccaatcaaaattgtttttacatcttcctataaaa-cttcttttaaagaaaacacaaaaaactagagtccaaattcttatattttagt 33198640  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  33198639 t-ttcttaataagtgt 33198625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 670
Target Start/End: Complemental strand, 7645270 - 7645221
Alignment:
Q  620 acaaaaaagtatactccaaattcttatgttttagttgttcttaataagtgt 670  Q
    |||||| | ||||||||||||||||||||||||||| ||||||||||||||    
T  7645270 acaaaatattatactccaaattcttatgttttagtt-ttcttaataagtgt 7645221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 670
Target Start/End: Complemental strand, 40808811 - 40808714
Alignment:
Q  570 aatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataagtg 669  Q
    ||||| ||||||||||||||||||| ||  |||||| |||| ||  ||| |||||||| ||| || |||||||||||| ||||||| |||||||||||||    
T  40808811 aatgaaaattgtttttacatcttcc-at-gaaacttattccaaagaaaacacaaaaaactatgctacaaattcttatgctttagtt-ttcttaataagtg 40808715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 601
Target Start/End: Original strand, 33677537 - 33677582
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaa 601  Q
    |||||||||||| | ||||| ||||||||||||||||||||||||||    
T  33677537 cataaccaatagtc-aatgaaaattgtttttacatcttcctataaaa 33677582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 655
Target Start/End: Complemental strand, 5280595 - 5280538
Alignment:
Q  599 aaaactttttcccaaagaaagacaaaaaag-tatactccaaattcttatgttttagtt 655  Q
    |||||||||||||||  ||| ||||||||  |||| ||||||||||||||||||||||    
T  5280595 aaaactttttcccaagaaaacacaaaaaaactatagtccaaattcttatgttttagtt 5280538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 26998383 - 26998416
Alignment:
Q  568 ccaatgagaattgtttttacatcttcctataaaa 601  Q
    ||||||| ||||||||||||||||||||||||||    
T  26998383 ccaatgaaaattgtttttacatcttcctataaaa 26998416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 35517015 - 35517048
Alignment:
Q  413 gtactccctccgtcccataatatatgcaaaaaaa 446  Q
    |||||||||||||||||||||||| |||||||||    
T  35517015 gtactccctccgtcccataatataagcaaaaaaa 35517048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 670
Target Start/End: Complemental strand, 680 - 568
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||||| |||||| | ||  ||| ||| |||| ||||||||||||||||||||||||||    
T  680 cataaccaatag-ccaatgaaaattgtttttacatctccctataaaa-cttttttcaaagaaaacacataaaactatactccaaattcttatgttttagt 583  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  582 t-ttcttaataagtgt 568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 555 - 670
Target Start/End: Original strand, 78011 - 78123
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||| ||||||||| |||||||||||||||||||||| | |||||||| | ||  ||| |||||||| ||||||| ||||||||||||||||||    
T  78011 cataaccaat-ggccaatgaaaattgtttttacatcttcctat-acaacttttttcaaagaaaacacaaaaaactatactctaaattcttatgttttagt 78108  T
Q  655 tgttcttaataagtgt 670  Q
    | ||||||||||||||    
T  78109 t-ttcttaataagtgt 78123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 555 - 666
Target Start/End: Complemental strand, 44878 - 44770
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||| ||||||||||  || ||||||||||| |||||||| ||  ||| |||||||| ||||||||||||| ||||||||||||    
T  44878 cataaccaatag-ccaatgaaaattgttttttaatattcctataaaa-ctttttccaaagaaaacacaaaaaaatatactccaaattattatgttttagt 44781  T
Q  655 tgttcttaataa 666  Q
    | ||||||||||    
T  44780 t-ttcttaataa 44770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 555 - 668
Target Start/End: Original strand, 10099 - 10209
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| | ||||| |||||||||||||||||||||| |||||||||||  ||  ||| |||||||| || | ||||||||||||||||||| |    
T  10099 cataaccaatagtc-aatgaaaattgtttttacatcttcctat-aaaactttttctaaagaaaacacaaaaaactacattccaaattcttatgttttaat 10196  T
Q  655 tgttcttaataagt 668  Q
    | ||||||||||||    
T  10197 t-ttcttaataagt 10209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 555 - 645
Target Start/End: Complemental strand, 3535 - 3447
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattctta 645  Q
    |||||||||||| ||||||| |||| ||||||||||||||||| |||||||||||  ||  ||| |||||||| |||||||||||||||||    
T  3535 cataaccaatag-ccaatgaaaattatttttacatcttcctat-aaaactttttcaaaagaaaacacaaaaaactatactccaaattctta 3447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 712
Target Start/End: Original strand, 157859 - 158001
Alignment:
Q  567 gccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagttgttcttaataa 666  Q
    |||||||| |||||||||||||||| || ||  |||||| |||| ||  ||| |||||||| ||| || |||||||||||| ||||||| ||||||||||    
T  157859 gccaatgaaaattgtttttacatctccccat-gaaacttattccaaagaaaacacaaaaaactatgctacaaattcttatgctttagtt-ttcttaataa 157956  T
Q  667 gtgtaaattttatttgttggctataatttgggacggaagggagtat 712  Q
    || | | |||||||| |||  |||||||| | |||| |||||||||    
T  157957 gtatgatttttattttttgcttataatttagaacgg-agggagtat 158001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 655
Target Start/End: Original strand, 1079 - 1164
Alignment:
Q  569 caatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    |||||| || |||||||||||||| |||||||| ||||||   ||| ||| |||||||| ||||||||||||| |||| ||||||||    
T  1079 caatgaaaactgtttttacatctttctataaaa-cttttttaaaaaaaaacacaaaaaactatactccaaatttttatattttagtt 1164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 655
Target Start/End: Original strand, 9039 - 9124
Alignment:
Q  569 caatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagtt 655  Q
    |||||| || |||||||||||||| |||||||| ||||||   ||| ||| |||||||| ||||||||||||| |||| ||||||||    
T  9039 caatgaaaactgtttttacatctttctataaaa-cttttttaaaaaaaaacacaaaaaactatactccaaatttttatattttagtt 9124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 666
Target Start/End: Original strand, 154915 - 155022
Alignment:
Q  555 cataaccaataggccaatgagaattgtttttacatcttcctataaaaactttttcccaaagaaagacaaaaaagtatactccaaattcttatgttttagt 654  Q
    |||||||||||| ||||||  ||||||||||||||||| ||||||||  |||||  ||||||||    ||||| |||| | || ||||||||||||||||    
T  154915 cataaccaatag-ccaatgtaaattgtttttacatctttctataaaactttttt--caaagaaaatacaaaaactatatttcagattcttatgttttagt 155011  T
Q  655 tgttcttaataa 666  Q
    | ||||||||||    
T  155012 t-ttcttaataa 155022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 154754 - 154787
Alignment:
Q  413 gtactccctccgtcccataatatatgcaaaaaaa 446  Q
    |||||||||||||||||||||||| |||||||||    
T  154754 gtactccctccgtcccataatataagcaaaaaaa 154787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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