View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226-Insertion-4 (Length: 747)
Name: NF3226-Insertion-4
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 5e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 522 - 747
Target Start/End: Original strand, 27715172 - 27715394
Alignment:
| Q |
522 |
acccgaattcctatgctcaaaacagccaggacaaaagcgcttgacagactacgcatgacagaaaacaccggcaaacaaaaactgcacaaactaacag-ta |
620 |
Q |
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| T |
27715172 |
acccgaattgcaatgctcaaaacagccaggacaaaagcgctttacagactgcgcatgacagaaaacaccggcaaacaaaaactgcacaaactaacagata |
27715271 |
T |
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| Q |
621 |
tcaattcaggaaccacaccactcgtcttcctgacattgaggatccttcctttgcgagacgatctgcctcatggttagcttcccttaggacatggataaat |
720 |
Q |
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| T |
27715272 |
tcaattcaggaaccacaccactcgtcttcctgacattgaggatccttccttt----gacgatctgcctcatggttagcttcccttaggacatggataaaa |
27715367 |
T |
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| Q |
721 |
tcgatatctttcataaccaataacata |
747 |
Q |
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| T |
27715368 |
tcgatatctttcataaccaataacata |
27715394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 27714841 - 27715074
Alignment:
| Q |
8 |
tattagagttctcctaatggtaatgaatgattctaagagaaataagcaagagaatgatggaatggaaataacgaaggcaatta-------------aacc |
94 |
Q |
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| T |
27714841 |
tattagagttctcctaatggtaatgaatgattctaagagaaataagcaagagaatgatggaatggaaataacgaaggcaattatgtcaataatataagcc |
27714940 |
T |
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| Q |
95 |
ctacttcaaagttctaagattcctcgtgataaggtgttactagttttttgctaaaacaagatgtacaaaaatacaccaaatatccttaagatacaaaaag |
194 |
Q |
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| T |
27714941 |
ctacttcaaagttctaagattcctcgtgataaggtgttactagttatttgctaaaacaagatgtacaaaaatacaccaaatatccttaagatacaaaaag |
27715040 |
T |
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| Q |
195 |
gaagagctctacttaaacaccatgatttacacct |
228 |
Q |
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| T |
27715041 |
gaagagctctacttacacaccatgatttacacct |
27715074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 257 - 480
Target Start/End: Complemental strand, 44754061 - 44753839
Alignment:
| Q |
257 |
ggtccttcagtaactaataagatgacaataagttcatctagcatccaggacgcaccatagctagcatacggcaagcaaatccacaccaatacacc-aatt |
355 |
Q |
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| T |
44754061 |
ggtccttcagtaactaataagatgacaataatctcatccagcatccaggaagcaccatagctagcatatggcaagcaaatccacaccattataccaaatt |
44753962 |
T |
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| Q |
356 |
ctatttgagacttgaagctaaaatatccaagtgtcatttaacgcaacgcagacctgctataattccatcaagaaaatatacaccaagaccatggggcagc |
455 |
Q |
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| T |
44753961 |
ctatttgagatttgaagctaaa--atccaagtgtcctttaagccaacgctgatctgctataatgcgaacaagaaaaaatacaccaaggccatggaacagc |
44753864 |
T |
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| Q |
456 |
agcagagtgcacttctcagacacct |
480 |
Q |
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| T |
44753863 |
agcagagtgcacttctcaaacacct |
44753839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 475 - 604
Target Start/End: Complemental strand, 44753763 - 44753634
Alignment:
| Q |
475 |
acaccttcaatgttgcgcagaacaccccctacacaacagctttgcctacccgaattcctatgctcaaaacagccaggacaaaagcgcttgacagactacg |
574 |
Q |
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| T |
44753763 |
acacctttattgttgcgcagaacaccccttataataaagttttgcctacccgaactgctatgctcaaaacagccaagaaaaaagcgcttgacagactaca |
44753664 |
T |
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| Q |
575 |
catgacagaaaacaccggcaaacaaaaact |
604 |
Q |
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| T |
44753663 |
catgaccgaaaacactggtaaacaaaaact |
44753634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 44754190 - 44754122
Alignment:
| Q |
141 |
tttgctaaaacaagatgtacaaaaatacaccaaatatccttaagatacaaaaaggaagagctctactta |
209 |
Q |
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||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
44754190 |
tttgctaaaactagatgtacaaaactacaccaaatatccttcagatacaaaaagaaagagctctactta |
44754122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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