View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3226-Insertion-5 (Length: 313)
Name: NF3226-Insertion-5
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 31754548 - 31754243
Alignment:
| Q |
8 |
cgcgatacattttctagtatcattaaatagaatccatgtacattttttatagctaaaaatgttagtaagttgatgtttatgttaattttcggtgtttgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31754548 |
cgcgatacattttctagtatcattaaatagaatccatgtacattttttatagctaaaaatgttagtaagttgatgtttatgttaattttcggtgtttgaa |
31754449 |
T |
|
| Q |
108 |
ctttgtccttcacatttcttagttcatcaaccaaactacacgcgtgacacagacagattcattgtcctcttgtttttgtgcatcataattcggacaacgc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
31754448 |
ctttgtccttcacatttcttagttcatcaaccaaattacacgcgtgacacagacagattcattgttctcttgtttttgtgcatcacaattttgacaacgc |
31754349 |
T |
|
| Q |
208 |
atattattgaaaagaaagttgaattgtcgccagaaaaataaattaggtttctgatttttgcacctctagcccttacaagtggatttcatgtagtactcat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31754348 |
atattattgaaaagaaagttgaattgtcgccggaaaaataaattaggtttctgatttttgcacttctagcccttacaagtggatttcatgtagtactcat |
31754249 |
T |
|
| Q |
308 |
gctaaa |
313 |
Q |
| |
|
|||||| |
|
|
| T |
31754248 |
gctaaa |
31754243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 44069939 - 44069895
Alignment:
| Q |
64 |
aaatgttagtaagttgatgtttatgttaattttcggtgtttgaac |
108 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| |||||||| |
|
|
| T |
44069939 |
aaatgttagtaagttagtggttatgttaattttcggagtttgaac |
44069895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University