View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226-Insertion-8 (Length: 629)
Name: NF3226-Insertion-8
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 7 - 629
Target Start/End: Complemental strand, 39034502 - 39033864
Alignment:
| Q |
7 |
agacaaccctaaatcctatagtattttcactattattcaatatatgaacttgattttatggagtttccaatgcagaaatattacaaaggtcaggttgatt |
106 |
Q |
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| T |
39034502 |
agacaaccctaaatcctatagtattttcactattattcaatatatgaacttgattttatggagtttccaatgcagaaatattacaaagatcaagttgatt |
39034403 |
T |
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| Q |
107 |
atca---------------atgaatactggtttatcaatggcattacttcgaccttcatctttcatgattttgctggtacgtctttatatgtatac---- |
187 |
Q |
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| T |
39034402 |
atcacatccagcatactcaatgaatactggtttatcaatggcattacttcgaccttcatctttcatgattttgctggtacgtctttatatgtatacatac |
39034303 |
T |
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| Q |
188 |
gttcatgctannnnnnnnncatggttcctcagcactcnnnnnnnnnnnnnnatttgatttgtaacaaagattaagaaacaattgaggtttgttattgatg |
287 |
Q |
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| T |
39034302 |
gttcatgctatttttttt-catg-ttcctcagcactctttattttctttg-atttgatttgtaacaaagattaagaaacaattgagatttgttattgatg |
39034206 |
T |
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| Q |
288 |
tcttcaactagaagtatacatagctacacataaatttacgatattatttgttgtgttattgtaggcatatggtgcactaattgtccttgcttcattgaca |
387 |
Q |
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| T |
39034205 |
tcttcaactagaagtatacatagctacacataaatttacgatattatttgttgtgttattgtaggcatatggtgcattaattgtccttgcttctttgaca |
39034106 |
T |
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| Q |
388 |
ccatgctggtatctcatggtcacacatattgagaaaagtgtgaatttgcactcagcaaatattgtgtcacaattgcaatcagaaattgagtactcagctg |
487 |
Q |
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| T |
39034105 |
ccatgctggtatctcatggtcacacatattgagaaaagtgtgaatttgcactcagcaaatattgtgtcacaattgcaatcagaaattgagtactcagctg |
39034006 |
T |
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| Q |
488 |
aactattgcatccaatgaaatcatcatcaacaaatttatctacattattgagctcaacccttaattctactaatatcaccttctcctatgttcacaccaa |
587 |
Q |
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| T |
39034005 |
aactattgcatccaatgaaatcatcatcaacaaatttatctacattattgagctcaacccttaattctactaatatcaccttctctgatgttcacaccaa |
39033906 |
T |
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| Q |
588 |
ggtatacccacttcttgtataatttcccttcaaaaccatata |
629 |
Q |
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| T |
39033905 |
ggtatacccacttcttgtataatttcccttcaaaaccatata |
39033864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 346 - 560
Target Start/End: Complemental strand, 40899594 - 40899380
Alignment:
| Q |
346 |
ttgtaggcatatggtgcactaattgtccttgcttcattgacaccatgctggtatctcatggtcacacatattgagaaaagtgtgaatttgcactcagcaa |
445 |
Q |
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| T |
40899594 |
ttgtaggcatatggtgcactgataactcttatctcattgacaccatgttggtatgtcatggtaacacatatcgagaaacaagcgaatttgagctcagaaa |
40899495 |
T |
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| Q |
446 |
atattgtgtcacaattgcaatcagaaattgagtactcagctgaactattgcatccaatgaaatcatcatcaacaaatttatctacattattgagctcaac |
545 |
Q |
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| T |
40899494 |
atattgtaacccaactccaatcagaaattaagtactcagctgaactgttgcacccgatgaaatcatcatcgacaaatttagcaagattgttgagttcaag |
40899395 |
T |
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| Q |
546 |
ccttaattctactaa |
560 |
Q |
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| T |
40899394 |
acttgattctactaa |
40899380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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