View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226-Insertion-9 (Length: 979)
Name: NF3226-Insertion-9
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 351 - 962
Target Start/End: Original strand, 34329465 - 34330078
Alignment:
| Q |
351 |
aattataatttttggaacttgttgggtctatattaccatctgcttagtcttgaattcatgcatatgtgaatttgatgactgttttacagaaattggtcat |
450 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34329465 |
aattataatttttggaacttgttgtgtctatattaccatctgcttagtcttgaattcatgcatatgtgaatttgatgactgttttacagaaattggtcat |
34329564 |
T |
|
| Q |
451 |
acagtctcgatgttggtggtggctcattaaaatttgattttgtttcttttatgtaattctaaaaataccgaacttaattctggaccgttttgatcagact |
550 |
Q |
| |
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|||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34329565 |
acagtcgcgatgttggtggcggctcattaaaatttgattttgtttattttatgtaattctaaaaataccgaacttaattctggaccgttttgatcagact |
34329664 |
T |
|
| Q |
551 |
gtcactgacttgctcactgcagcaaatccgggtccatgtttaccgattcttttttatgatcatcttgttggagctgaatacagagtatttgtaacacttc |
650 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34329665 |
gtcactgacttgctcactgcagcaaatccgggtccatgtttaccgattcttttttatgatcatcttgttggagctgaatacagagtattggtaacacttc |
34329764 |
T |
|
| Q |
651 |
tagtgaattgattgcatattctgtcaaattgtcattttgatgaactctacatgggagttttgtgatattgtttcgttgaatgatagtaataatttaatac |
750 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34329765 |
tagtgaattgattgcatattctgtcaaattgtcattttgatgaagtctacatgggagttttgtgatattgtttcgttgaatgatagtaataatttaatac |
34329864 |
T |
|
| Q |
751 |
ataaataaattattttgcctgttaaagaaaataatgatattaatatagactggtataaatcaattaacaaacgtaaggtcatttaaatggtgctgtgctg |
850 |
Q |
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| T |
34329865 |
ataaataaattattttgcctgttaaagaaaataatgatattaatatagactggtataaatcaattcacaaacgtaaggtcatttgaatggtgctgtgctg |
34329964 |
T |
|
| Q |
851 |
ttgctct-aaaagtcattttatattactttgcagagaggttg-aaatattaagaaggcttttacacctcccagagaagtgcatgttcgagtaacccactc |
948 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
34329965 |
ttgctctaaaaagtcattttatattactttgcagagaggttgaaaatattaagaaggctttcacacctcccagagaagtgcatgttcaagtaacccactc |
34330064 |
T |
|
| Q |
949 |
tatgcctccccaaa |
962 |
Q |
| |
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|||||||||||||| |
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| T |
34330065 |
tatgcctccccaaa |
34330078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 34329186 - 34329463
Alignment:
| Q |
8 |
cttgtttggttcaatgatttaatttttcttactgcaatctcaccaacttatattatcaacgtttttgtgattatttttcatagtattataacttgttatg |
107 |
Q |
| |
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||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34329186 |
cttgtttggttcaataatttaatttt-cttactacaatctcaccaacttatattatcaacgtttttgtgattatttttcttagtattataacttgttatg |
34329284 |
T |
|
| Q |
108 |
tttattattccacnnnnnnngcatgtttctgtcagtaacgtatttaatgattttagcctatgtctttcctccagtatcttctactaatatattcttaaca |
207 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
34329285 |
tttattattccactttttttgcatgtttctgtcagtaacgtatttaatgatcttagcctatgtttttcctccagtatcttctacta--atattcttaaca |
34329382 |
T |
|
| Q |
208 |
agcagtacaccttagttttgnnnnnnngattgtattctatggtataaacgcatattccctaggtggcttcactataaattc |
288 |
Q |
| |
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|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34329383 |
agtagtacaccttagttttgtttttttgattgtattctatggtataaacgcatattccctaggtggcttcactataaattc |
34329463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 1e-56; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 824 - 962
Target Start/End: Complemental strand, 9669165 - 9669025
Alignment:
| Q |
824 |
taaggtcatttaaatggtgctgtgctgttgctctaaa-agtcattttatattactttgcagagaggttgaaa-tattaagaaggcttttacacctcccag |
921 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
9669165 |
taaggtcatttaaatggtgctgtactgttgctctaaatagtcattttatattactttgcagagaggttgaaaatattaagaaggctttcacacctcccag |
9669066 |
T |
|
| Q |
922 |
agaagtgcatgttcgagtaacccactctatgcctccccaaa |
962 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
9669065 |
agaagtgcatgttcaagtaacccactctatgcctccccaaa |
9669025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 663 - 775
Target Start/End: Complemental strand, 9669275 - 9669163
Alignment:
| Q |
663 |
tgcatattctgtcaaattgtcattttgatgaactctacatgggagttttgtgatattgtttcgttgaatgatagtaataatttaatacataaataaatta |
762 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9669275 |
tgcatattctgccaaattgtcattttgatgaactctacatgggagttttgtgatgttttttcgatgaatgatagtaataatttaatacataaataaatta |
9669176 |
T |
|
| Q |
763 |
ttttgcctgttaa |
775 |
Q |
| |
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||||||||||||| |
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| T |
9669175 |
ttttgcctgttaa |
9669163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 560 - 664
Target Start/End: Complemental strand, 9669413 - 9669309
Alignment:
| Q |
560 |
ttgctcactgcagcaaatccgggtccatgtttaccgattcttttttatgatcatcttgttggagctgaatacagagtatttgtaacacttctagtgaatt |
659 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |
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| T |
9669413 |
ttgctcactgcagcaaatccgggtccatgtttaccgattcttttttatgatcatcttgttggagctgaatacagagtattggtaacacctctagtgattt |
9669314 |
T |
|
| Q |
660 |
gattg |
664 |
Q |
| |
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||||| |
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|
| T |
9669313 |
gattg |
9669309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 75 - 378
Target Start/End: Complemental strand, 9669969 - 9669671
Alignment:
| Q |
75 |
tgattatttttcatagtattataacttgttatgtttattattccacnnnnnnngcatgtttctgtcagtaacgtatttaatgattttagcctatgtcttt |
174 |
Q |
| |
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||||||||||||||| |||| |||| ||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||| ||||||| ||| |
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| T |
9669969 |
tgattatttttcata---ttatcactttttatggttactattccactttttttgcatgtttccgtcagtaacgtatttaatgattttaccctatgt-ttt |
9669874 |
T |
|
| Q |
175 |
cctccagtatcttctactaatatattcttaacaagcagtacaccttagttttg-------------nnnnnnngattgtattctatggtataaacgcata |
261 |
Q |
| |
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||| ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
9669873 |
tctctagtatcttcta-----atattcttaaca---agtacaccttagttttgttttttttttgttttttttttattgtattctatggtataaacgtata |
9669782 |
T |
|
| Q |
262 |
ttccctaggtggcttcactataaattccatttcggaannnnnnnatttcattcctattcaacgtggatctctctgtgttgtgtataatcaattataattt |
361 |
Q |
| |
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||||||||||| |||||| |||||| | |||| |||| |||||||||||||||||| || |||||| ||| ||||||||||||||| || |
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|
| T |
9669781 |
ttccctaggtgacttcaccataaatacaatttgggaa-ttttttatttcattcctattcaacatgaatctct-----gtgtctataatcaattataaatt |
9669688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 397 - 469
Target Start/End: Complemental strand, 9669614 - 9669543
Alignment:
| Q |
397 |
gtcttgaattcatgcatatgtgaatttgatgactgttttacagaaattggtcatacagtctcgatgttggtgg |
469 |
Q |
| |
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||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| || | |||||||||| |
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|
| T |
9669614 |
gtctttaattcatgcatatgtgaatttgataactg-tttacagaaattggtcatactttcgccatgttggtgg |
9669543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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