View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_high_1 (Length: 635)
Name: NF3226_1D_high_1
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 613
Target Start/End: Original strand, 38128024 - 38128611
Alignment:
| Q |
8 |
gattatactgtattcggtaatagaggaataagtaattgatcaagtaatgatggaagatattcaatagaatggactgaactttgacctgtgattactttgt |
107 |
Q |
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| T |
38128024 |
gattatactgttttcggtaataggggaataagtaattgatcaagtaatgatggaagatattcaatagaatggactgaactttgacttgtgattactttgt |
38128123 |
T |
|
| Q |
108 |
aatcttttcaaaatagtagtatgcatgtaagagtatgaatgagttgaattgagaaaacacttgaaacttaggttttacttgctaataatgatgaagctca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128124 |
aatcttttcaaaatagtagtatgcatgtaagagtatgaatgagttgaattgagaaaacacttgaaacttaggttttacttgctaataatgatgaagctca |
38128223 |
T |
|
| Q |
208 |
agcttgaacnnnnnnnnnnnnn-cttataaaaatattagaatcataggattaagttaagaagtttgaaactttccattacacatatctgttttccaaata |
306 |
Q |
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| T |
38128224 |
agcttgaattttttttattttttcttataaaaatattagaatcataggattaagttaagaagtttgaaactttccattacacatatctgttttccaaata |
38128323 |
T |
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| Q |
307 |
accagtttttgtatttatatttaagttttgatttggacttgctcaaaagttcgaagtttgagctcagcttacatgcatagctaatctatacgctctattt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128324 |
accagtttttgtatttatatttaagttttgatttggacttgctcaaaagttcgaagtttgagctcagcttacatgcatagctaatctatacgctctattt |
38128423 |
T |
|
| Q |
407 |
tggttctggttctgcagagctaatcttacttgtaatgaacctgttaataaaatcttcattttaggtagagtagcttaggccttatctgatagcttggtag |
506 |
Q |
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| T |
38128424 |
tggttctggttctgcagagctaatcttacttgtaatgaacctgttaataaaatcttcattttaggtagag-------------------tagcttggtag |
38128504 |
T |
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| Q |
507 |
tatttaaccaactaccctttttcgtttcattttctcaaatataaagcagatacaaatgtctctgaatcctaaaggccatgcaatcaaggcattccaggag |
606 |
Q |
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| T |
38128505 |
tatttaaccaactaccctttttcgtttcattttctcaaacataaagcagatacaaatgtctctgaatcctaaaggccatgcaatcaaggcattccaggag |
38128604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 333 - 610
Target Start/End: Complemental strand, 45266819 - 45266535
Alignment:
| Q |
333 |
tttgatttggacttgctcaaaagttcgaagtttgagctcagcttacatgcatagctaatctatacgctctattttggttctggttctgcagagctaatct |
432 |
Q |
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| T |
45266819 |
tttgatttcaacttgctcaaaaatataaagtttgagcttaacttacctgcatagttaatctatatgctttattttggttctggttctgcatagctgatct |
45266720 |
T |
|
| Q |
433 |
tacttgtaatgaacctgttaataaaatcttcattttaggtagagtagcttaggccttatctgatagcttggtagtatttaaccaact--accctttttcg |
530 |
Q |
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| T |
45266719 |
agcttgtaatgcacctgttcttgaaatttgcattttagctagagtagcttaggctttatctgatagcttggtaatatttaacgaagtgcattttttttcg |
45266620 |
T |
|
| Q |
531 |
tttcattttctcaaatataaagcagatacaaatgtctctgaat-----cctaaaggccatgcaatcaaggcattccaggagcatg |
610 |
Q |
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| T |
45266619 |
tttaattttctcaaaggtaaagcagaaacaaatgtctttgaatatgaacctaaagaccatgcaaccaaggcattccaagagcatg |
45266535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 13090351 - 13090281
Alignment:
| Q |
235 |
aaaaatattagaatcataggattaagttaagaagtttgaaactttccattacacatatctgttttccaaat |
305 |
Q |
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| T |
13090351 |
aaaaagattggaatcataggattaagttaagaagtttaaaactttctattccacatatccgttttccaaat |
13090281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 45267165 - 45266991
Alignment:
| Q |
34 |
aataagtaattgatcaagtaatgatggaagat--attcaatagaatggactgaactttgacctgtgattactttgtaatcttttcaaaatagtagtatgc |
131 |
Q |
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|||||||||||||| |||||||||||||| | ||| ||| || |||||| ||||||||| |||||||| |||| || ||||||| |||||| |
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| T |
45267165 |
aataagtaattgataaagtaatgatggaaccttaattgaattgagtggactaaactttgacttgtgattagtttgctatggtttcaaa------gtatgc |
45267072 |
T |
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| Q |
132 |
atgtaagagtatgaatgagttgaattgagaaaacacttgaaacttaggttttacttgctaataatgatgaagctcaagctt |
212 |
Q |
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| T |
45267071 |
acgaaagagagtcaatgaattgaactgagaacgcgcttgaaacttaggttttacttgctaaaaaagatgaagctcaagctt |
45266991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 18336855 - 18336928
Alignment:
| Q |
235 |
aaaaatattagaatcataggattaagttaagaagtttgaaactttccattacacatatctgttttccaaataac |
308 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |
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| T |
18336855 |
aaaaagattggaatcataggattaagttaagaagtttaaaactttctattccacatatctgttttccaaataac |
18336928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 26614519 - 26614446
Alignment:
| Q |
235 |
aaaaatattagaatcataggattaagttaagaagtttgaaactttccattacacatatctgttttccaaataac |
308 |
Q |
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||||| ||| ||||||||||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||| |
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| T |
26614519 |
aaaaagattggaatcataggattaagttaagaagtttaaaactttctattccacatatccgttttccaaataac |
26614446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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