View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_high_13 (Length: 250)
Name: NF3226_1D_high_13
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 21307931 - 21308078
Alignment:
| Q |
4 |
agtttggtgttggtggttaaagttgaacttaaatatttacgggatatgaaccaacttcttcccaacttaaccaaccatccaaggttggtctttaaatgat |
103 |
Q |
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| T |
21307931 |
agtttgatgttgatggttaaagttgaacttaaatatttacgggatatgaaacaacttcttcccaacttaaccaaccatccgaggttggtctttaaatgat |
21308030 |
T |
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| Q |
104 |
tactctttcttgttttttcacttgtttatgtttaactaaaaataatac |
151 |
Q |
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| T |
21308031 |
tactctttcttgttttttcacttgtttatgtttaactaaaaataatac |
21308078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 21308106 - 21308168
Alignment:
| Q |
182 |
caacacttgaaattgttgtgaattctcaaaccctggtacaaacgcaataacaatgcatgacgt |
244 |
Q |
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| T |
21308106 |
caacacttgaaattgttgtgaattctcaaaccctggtacaaaagcaataacaatgcatgacgt |
21308168 |
T |
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