View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_high_15 (Length: 215)
Name: NF3226_1D_high_15
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 30504475 - 30504668
Alignment:
| Q |
1 |
aggaggacggtgattcttgagatattggccaaaagtgttccagtcacggcgtttctggttttcatagcggctgcttgtggtggtagagccagaaggtgaa |
100 |
Q |
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| T |
30504475 |
aggaggacggtgattcttgaggtactggccaaaagtgttccagtcacggcgtttctggttttcatagcggctgcttgtggtggtagagccagaaggtgaa |
30504574 |
T |
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| Q |
101 |
gagctaccaactatggcgttgctgatgttgttgttactgctgttggtagttatggtgctgttggtgaggctgcaactgttgtcagagttacatg |
194 |
Q |
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| T |
30504575 |
gagctaccaactatggcgttgctgatgttgttgttactgctgttggtagttatggtgctgttggtgaggctgcaactgttgtcagagttacatg |
30504668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 51438948 - 51438862
Alignment:
| Q |
1 |
aggaggacggtgattcttgagatattggccaaaagtgttccagtcacggcgtttctggttttcatagcggctgcttgtggtggtaga |
87 |
Q |
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| T |
51438948 |
aggaggacggtgattcttgaggtactggacaaaggtgttccagtcacggcgtttctggttttcatagcggctgcttttggtggtaga |
51438862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 38980175 - 38980105
Alignment:
| Q |
5 |
ggacggtgattcttgagatattggccaaaagtgttccagtcacggcgtttctggttttcatagcggctgct |
75 |
Q |
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| T |
38980175 |
ggacgatgattcttgaggtactgaccaaaggtgttccagtcacggcgtttctggttctcatagcggctgct |
38980105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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