View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_low_11 (Length: 330)
Name: NF3226_1D_low_11
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 114 - 330
Target Start/End: Complemental strand, 6491194 - 6490978
Alignment:
| Q |
114 |
gttgtcttcagcttcttggatggtggtgtgattttcttgaaaaccaatgggagcttgatctttggaatcgtggaattgtttggtgctctccctcttgcaa |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6491194 |
gttgtcttcagcttcttgggtggtggtgtgattttcttgaaaaccaatgggaacttgatctttggaatcgtggaattgtttggtgctctccctcttgcaa |
6491095 |
T |
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| Q |
214 |
agcttggctgggatggtggcagtcttaataatctgaatgcaggggaaacagaccctatgtcgtgaagccgtctcattgtacatcagatcaactgcgccat |
313 |
Q |
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| T |
6491094 |
agcttggctgggatggtggcagtcttaataatctgaatgcaggggaaacaaaccctatgtcgtgaagccgtctcattgtacatcagatcaactgcgccat |
6490995 |
T |
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| Q |
314 |
ttagagtggtgtcacgg |
330 |
Q |
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||||||||||||||||| |
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| T |
6490994 |
ttagagtggtgtcacgg |
6490978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 272
Target Start/End: Complemental strand, 41869970 - 41869846
Alignment:
| Q |
147 |
ttcttgaaaaccaatgggagcttgatctttggaatcgtggaattgtttggtgctctccctcttgcaaagcttggctgggatggtggcagtcttaataatc |
246 |
Q |
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| T |
41869970 |
ttcttgtacaccaaggggaacttgat-tttggaattgtggaactgcttagtgctctcccttttgcacagattagctgggatggtggccgtcttaatgatc |
41869872 |
T |
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| Q |
247 |
tgaatgcaggggaaacagaccctatg |
272 |
Q |
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| T |
41869871 |
tggatgcaaggaaatctgaccctatg |
41869846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 49866302 - 49866186
Alignment:
| Q |
1 |
tgttttgtatcttacttcatcttttcaaaatgttccctgctgaaatttggaagttttcaagatcttaatatgatgtttgtctttccaaaacacatcgccg |
100 |
Q |
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| T |
49866302 |
tgttttgtatcttacttcatcttttcaaaatgttccctgctgaaatttggaagttttcaagatctttatatgatgtttggctttccgaaacacatcgccg |
49866203 |
T |
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| Q |
101 |
atgcttagttaaggttg |
117 |
Q |
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|||||| ||||| |||| |
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| T |
49866202 |
atgcttggttaaagttg |
49866186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 15297787 - 15297648
Alignment:
| Q |
114 |
gttgtcttcagcttcttggatggtggtgtgattttcttgaaaaccaatgggagcttgatctttggaatcgtggaattgtttggtgctctccctcttgcaa |
213 |
Q |
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|||||||| |||||| ||| ||| || | || |||||||| ||||| |||| |||||| ||| || | ||| || ||||| ||||||||||| |||||| |
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| T |
15297787 |
gttgtcttgagcttcctggttgggggcctaatcttcttgaacaccaacgggaacttgat-tttagagttgtgaaactgtttcgtgctctcccttttgcaa |
15297689 |
T |
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| Q |
214 |
agcttggctgggatggtggcagtcttaataatctgaatgca |
254 |
Q |
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| T |
15297688 |
aggttagctgggattgtggcagtcttgatgatctggatgca |
15297648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 39709628 - 39709506
Alignment:
| Q |
174 |
tttggaatcgtggaattgtttggtgctctccctcttgcaaagcttggctgggatggtggcagtcttaataatctgaatgcaggggaaacagaccctatgt |
273 |
Q |
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|||||||| ||| || || || ||||||||||| ||||| || || || |||||||||||||||||||| || ||||||||||| || | ||||||||| |
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| T |
39709628 |
tttggaattgtgaaactgcttagtgctctcccttttgcacagattagccgggatggtggcagtcttaatgatttgaatgcagggaaacctgaccctatga |
39709529 |
T |
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| Q |
274 |
cgtgaagccgtctcattgtacat |
296 |
Q |
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|| || ||| |||| |||||||| |
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| T |
39709528 |
cgagatgccatctcgttgtacat |
39709506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 39718276 - 39718196
Alignment:
| Q |
174 |
tttggaatcgtggaattgtttggtgctctccctcttgcaaagcttggctgggatggtggcagtcttaataatctgaatgca |
254 |
Q |
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|||||||| ||| || || || |||||||| || ||||| || || ||||||||||||||||||||||| || |||||||| |
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| T |
39718276 |
tttggaattgtgaaactgcttagtgctctctcttttgcacagattagctgggatggtggcagtcttaatgatttgaatgca |
39718196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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