View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_low_12 (Length: 329)
Name: NF3226_1D_low_12
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 9818163 - 9817988
Alignment:
| Q |
7 |
aacgtaaacataacctggtgcatgcagacaaccgttctttgccttttgataaattatcaagccatctatacgatcaaggctaatgcattaatcaatgtct |
106 |
Q |
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| T |
9818163 |
aacgtaaacataacctggtgcatgcagacaaccgttctttgccatttgataaattatcaagccatctatacgatcaaggctaatgcattaatcaatgtct |
9818064 |
T |
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| Q |
107 |
ctaaaatatctttgaaaacattcatcatcc--ttgcaatagttgcagatagctattgtaaagcagtcatcgaatcc |
180 |
Q |
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| T |
9818063 |
ctaaaatatctttgaaaacattcatcatccttttgcaatagttgcagatagctgttgtaaagcagtcatcgaatcc |
9817988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 178 - 317
Target Start/End: Complemental strand, 9817617 - 9817478
Alignment:
| Q |
178 |
tcccttgtgcaggtttcaagattcaaaatagacattgtcacaaatttcagcacaaaccaactcatttagacattgcaaaatgaaaatcattaacttccct |
277 |
Q |
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| T |
9817617 |
tcccttgtgcaggtttcaagattcaaaatagacattgtcacaaatttcagcacaaaccaactcatttagacattgcaaaatgaaaatcattaacttccct |
9817518 |
T |
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| Q |
278 |
acaaccaaaacaattctcaatatttgatccttgatagtat |
317 |
Q |
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| T |
9817517 |
acaaccaaaaaaattctcaatatttgatccttgatagtat |
9817478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 9855417 - 9855559
Alignment:
| Q |
12 |
aaacataacctggtgcatgcagacaaccgttctttgccttttgataaattatcaagccatctatacgatcaaggctaatgcattaatcaatgtctctaaa |
111 |
Q |
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| T |
9855417 |
aaacataatctggtgcatgccaacaaccgttctttgccatttgataaattatcaagccatctatatgatcaaggctaatgcattaatcaacgtctctaaa |
9855516 |
T |
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| Q |
112 |
atatctttgaaaacattcatcatccttgcaatagttgcagata |
154 |
Q |
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| T |
9855517 |
atatctttgaaaacattcatcatccttgcaatagttgcagata |
9855559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 24351019 - 24350894
Alignment:
| Q |
192 |
ttcaagattcaaaatagacattgtcacaaatttcagcacaaaccaactcatttagacattgcaaaatgaaaatcattaacttccctacaaccaaaacaat |
291 |
Q |
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| T |
24351019 |
ttcaaggttcaaaatagatattgtcacaaatt-cagcacaaaccaactcatttagtcattgcaaaatgaaaatcattaacttctctacaaccaaaacaat |
24350921 |
T |
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| Q |
292 |
tctcaatatttgatcc-ttgatagtat |
317 |
Q |
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| T |
24350920 |
tatcaatatttgatcctttgatagtat |
24350894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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