View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_low_16 (Length: 297)
Name: NF3226_1D_low_16
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 37704741 - 37704454
Alignment:
| Q |
5 |
ggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttggtgttaattacg |
104 |
Q |
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| T |
37704741 |
ggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacg |
37704642 |
T |
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| Q |
105 |
ttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcag |
204 |
Q |
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| T |
37704641 |
ttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcag |
37704542 |
T |
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| Q |
205 |
tatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
292 |
Q |
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| T |
37704541 |
tatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
37704454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 37699266 - 37698974
Alignment:
| Q |
5 |
ggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttggtgttaatt |
101 |
Q |
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| T |
37699266 |
ggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaatt |
37699167 |
T |
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| Q |
102 |
acgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcata |
200 |
Q |
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| T |
37699166 |
acgttcgaaaagtcttggttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcata |
37699067 |
T |
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| Q |
201 |
tcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
291 |
Q |
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| T |
37699066 |
tcagtatacggttatgaaaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 37437806 - 37437520
Alignment:
| Q |
5 |
ggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttggtgttaatt |
101 |
Q |
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|||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||| |
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| T |
37437806 |
ggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactt----gctaatt |
37437711 |
T |
|
| Q |
102 |
acgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcata |
200 |
Q |
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| T |
37437710 |
acgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattgtcata |
37437611 |
T |
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| Q |
201 |
tcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
292 |
Q |
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| T |
37437610 |
tcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 292
Target Start/End: Complemental strand, 37698864 - 37698636
Alignment:
| Q |
44 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttggtg----ttaattacgttcaaaaagtc-tggtcttcgaagatattatttag |
138 |
Q |
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| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
|
| Q |
139 |
tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat |
238 |
Q |
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| T |
37698764 |
tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat |
37698690 |
T |
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| Q |
239 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
292 |
Q |
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| T |
37698689 |
aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 16840948 - 16841109
Alignment:
| Q |
9 |
tatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttggtgttaatta |
102 |
Q |
| |
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|||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| | || |||||| |
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| T |
16840948 |
tatttttaagcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaacttag-tgctaatta |
16841046 |
T |
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| Q |
103 |
cgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
164 |
Q |
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|||||||||||||| ||||||| ||||| |||||||||||| | |||||||||||||| |||| |
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| T |
16841047 |
cgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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