View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3226_1D_low_17 (Length: 292)
Name: NF3226_1D_low_17
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_low_17 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 37163315 - 37163031
Alignment:
| Q |
8 |
agatggacatcaacttattgatgattataagggcgagtatgtgggtgaacaagttgttgctaaagatgatgttaatgatgttccttcttgggttggtgat |
107 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37163315 |
agatggacgtcgtcttattgatgattataagggcgagtatgtgggtgaacaagttgttgctaaagatgatgttaatgatgttccttcttgggttggtgat |
37163216 |
T |
|
| Q |
108 |
ggtttaagtgttggtgttcgaagacttcttcatgtaaatcaacataaactcaaggctaatgtggttgtggctaaagatggtagtggaaagttcaagaaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37163215 |
ggtttaagtgttggtgttcgaagacttcttcatgtaaatcaacataaactcaaggctaatgtggttgtggctaaagatggtagtggaaagtttaagaaaa |
37163116 |
T |
|
| Q |
208 |
tcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttattcatatcaaggagggtgtttatcatgagtatgt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37163115 |
tcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttattcatatcaaggagggtgtttatcatgagtatgt |
37163031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 292
Target Start/End: Original strand, 46315021 - 46315153
Alignment:
| Q |
160 |
aggctaatgtggttgtggctaaagatggtagtggaaagttcaagaaaatcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttat |
259 |
Q |
| |
|
||||| |||| ||||| ||||| ||||| |||||||| |||| | ||||| ||| ||| | || || ||||| ||||| ||| || || |||||||| |
|
|
| T |
46315021 |
aggctcatgttgttgttgctaaggatggaagtggaaatttcaccacaatcactgaggctcttaagcatgttcccaagaaaaacttgaagccatttgttat |
46315120 |
T |
|
| Q |
260 |
tcatatcaaggagggtgtttatcatgagtatgt |
292 |
Q |
| |
|
| | |||||||||||||||||| | |||||||| |
|
|
| T |
46315121 |
ttacatcaaggagggtgtttataaagagtatgt |
46315153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University