View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226_1D_low_22 (Length: 252)

Name: NF3226_1D_low_22
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226_1D_low_22
NF3226_1D_low_22
[»] chr2 (37 HSPs)
chr2 (1-236)||(42982418-42982654)
chr2 (12-131)||(33019142-33019260)
chr2 (12-110)||(42740977-42741075)
chr2 (132-212)||(7629750-7629830)
chr2 (12-131)||(44439231-44439353)
chr2 (17-110)||(11504053-11504146)
chr2 (12-107)||(13912790-13912886)
chr2 (12-131)||(16518760-16518877)
chr2 (16-110)||(4894147-4894242)
chr2 (12-62)||(1976850-1976900)
chr2 (12-110)||(43501125-43501222)
chr2 (27-209)||(37420196-37420391)
chr2 (12-131)||(22535979-22536097)
chr2 (73-200)||(37649534-37649659)
chr2 (12-107)||(5533017-5533113)
chr2 (59-99)||(7630204-7630244)
chr2 (133-205)||(9943318-9943390)
chr2 (131-199)||(40582650-40582718)
chr2 (135-207)||(43717235-43717307)
chr2 (144-211)||(3476561-3476628)
chr2 (16-55)||(9605242-9605281)
chr2 (42-131)||(10618957-10619045)
chr2 (18-131)||(11510934-11511046)
chr2 (12-51)||(15220847-15220886)
chr2 (59-129)||(30503192-30503260)
chr2 (25-110)||(3352076-3352162)
chr2 (26-87)||(33502260-33502322)
chr2 (137-214)||(4778439-4778516)
chr2 (59-131)||(21659700-21659770)
chr2 (12-92)||(32596009-32596090)
chr2 (12-49)||(40401629-40401666)
chr2 (49-131)||(2002718-2002799)
chr2 (181-209)||(3654759-3654787)
chr2 (12-87)||(8800684-8800760)
chr2 (12-64)||(13238847-13238899)
chr2 (146-198)||(16519348-16519400)
chr2 (12-87)||(33047568-33047644)
[»] chr6 (39 HSPs)
chr6 (12-204)||(34620782-34620985)
chr6 (12-204)||(34748219-34748422)
chr6 (12-110)||(1485132-1485231)
chr6 (12-110)||(4910908-4911007)
chr6 (20-127)||(852517-852623)
chr6 (12-99)||(31305833-31305921)
chr6 (16-90)||(17225872-17225947)
chr6 (13-131)||(2234496-2234614)
chr6 (25-131)||(26280586-26280691)
chr6 (138-209)||(29240575-29240646)
chr6 (22-208)||(5724626-5724823)
chr6 (12-87)||(3482069-3482145)
chr6 (133-209)||(10400814-10400890)
chr6 (29-131)||(10874475-10874576)
chr6 (11-110)||(25388077-25388176)
chr6 (16-83)||(34027407-34027475)
chr6 (16-110)||(6895940-6896035)
chr6 (21-99)||(9505781-9505860)
chr6 (12-110)||(16540107-16540206)
chr6 (12-109)||(882687-882785)
chr6 (12-84)||(25195876-25195947)
chr6 (133-206)||(31812203-31812276)
chr6 (45-127)||(7952728-7952809)
chr6 (16-130)||(8854902-8855015)
chr6 (16-87)||(8860527-8860599)
chr6 (12-99)||(30926765-30926852)
chr6 (133-210)||(33136601-33136677)
chr6 (133-200)||(33997098-33997165)
chr6 (15-83)||(947594-947661)
chr6 (12-62)||(24982342-24982392)
chr6 (12-131)||(25195352-25195468)
chr6 (136-182)||(31303120-31303166)
chr6 (16-108)||(34898697-34898791)
chr6 (61-110)||(765422-765471)
chr6 (12-131)||(6654076-6654194)
chr6 (132-209)||(7952443-7952520)
chr6 (141-205)||(7262966-7263030)
chr6 (12-56)||(8856362-8856406)
chr6 (21-87)||(34910970-34911035)
[»] chr4 (28 HSPs)
chr4 (12-131)||(32818356-32818474)
chr4 (12-131)||(55927756-55927874)
chr4 (12-99)||(10185205-10185293)
chr4 (12-110)||(8604608-8604707)
chr4 (13-108)||(16551959-16552053)
chr4 (12-131)||(35065044-35065162)
chr4 (12-91)||(4243406-4243486)
chr4 (21-99)||(33843988-33844067)
chr4 (18-110)||(9064231-9064324)
chr4 (12-87)||(21691198-21691274)
chr4 (11-106)||(22250230-22250326)
chr4 (13-131)||(9134591-9134706)
chr4 (12-131)||(46344820-46344935)
chr4 (12-87)||(45011897-45011973)
chr4 (16-110)||(29904232-29904327)
chr4 (136-209)||(47596416-47596490)
chr4 (136-209)||(2635054-2635127)
chr4 (28-131)||(50061630-50061732)
chr4 (58-129)||(2635146-2635215)
chr4 (12-110)||(1616391-1616489)
chr4 (135-205)||(41058821-41058891)
chr4 (12-81)||(45694643-45694713)
chr4 (59-131)||(26617449-26617519)
chr4 (25-62)||(32100341-32100378)
chr4 (35-99)||(37439156-37439221)
chr4 (59-99)||(8330127-8330167)
chr4 (11-87)||(25927331-25927406)
chr4 (12-52)||(47144273-47144313)
[»] chr8 (32 HSPs)
chr8 (12-110)||(32927892-32927991)
chr8 (12-111)||(35494989-35495089)
chr8 (25-110)||(13384653-13384739)
chr8 (12-131)||(4662889-4663007)
chr8 (12-99)||(26100132-26100220)
chr8 (12-131)||(16972050-16972168)
chr8 (12-131)||(37684386-37684504)
chr8 (21-110)||(15677810-15677901)
chr8 (137-209)||(35495151-35495223)
chr8 (136-208)||(36448006-36448078)
chr8 (11-110)||(38868498-38868598)
chr8 (12-84)||(32767413-32767488)
chr8 (11-62)||(32736511-32736562)
chr8 (20-110)||(32994236-32994327)
chr8 (20-80)||(5859057-5859118)
chr8 (15-87)||(38335850-38335923)
chr8 (133-210)||(39648263-39648340)
chr8 (28-131)||(44141052-44141154)
chr8 (15-99)||(30098921-30099004)
chr8 (132-207)||(4554399-4554474)
chr8 (25-126)||(38537357-38537457)
chr8 (21-63)||(9695435-9695477)
chr8 (12-53)||(3279028-3279069)
chr8 (135-176)||(8252721-8252762)
chr8 (22-110)||(13418815-13418904)
chr8 (133-206)||(32056259-32056331)
chr8 (12-131)||(35495241-35495359)
chr8 (11-87)||(38868766-38868843)
chr8 (11-51)||(2764454-2764494)
chr8 (11-99)||(18355835-18355922)
chr8 (133-205)||(24776211-24776283)
chr8 (14-54)||(32101130-32101170)
[»] chr7 (16 HSPs)
chr7 (19-110)||(38123659-38123751)
chr7 (13-131)||(27571843-27571960)
chr7 (12-131)||(40491559-40491677)
chr7 (6-110)||(41386795-41386900)
chr7 (12-110)||(40561744-40561843)
chr7 (12-98)||(45557377-45557464)
chr7 (22-110)||(597942-598030)
chr7 (42-110)||(30182312-30182381)
chr7 (16-131)||(45005001-45005115)
chr7 (132-203)||(38123765-38123836)
chr7 (12-110)||(41788316-41788415)
chr7 (133-209)||(15050184-15050259)
chr7 (13-83)||(40795976-40796047)
chr7 (58-127)||(5489879-5489946)
chr7 (12-81)||(42816454-42816524)
chr7 (61-110)||(28725088-28725137)
[»] chr1 (40 HSPs)
chr1 (12-110)||(3016162-3016261)
chr1 (12-109)||(30557505-30557601)
chr1 (12-107)||(1514346-1514442)
chr1 (14-127)||(10324926-10325038)
chr1 (14-108)||(11049252-11049347)
chr1 (16-110)||(48549004-48549097)
chr1 (12-110)||(28083874-28083973)
chr1 (12-87)||(7524136-7524212)
chr1 (12-90)||(213523-213602)
chr1 (20-109)||(30850393-30850483)
chr1 (59-108)||(3515820-3515869)
chr1 (24-131)||(6021785-6021891)
chr1 (17-96)||(26373535-26373612)
chr1 (27-106)||(28287337-28287417)
chr1 (12-87)||(34915089-34915165)
chr1 (28-110)||(7790644-7790727)
chr1 (28-110)||(8381966-8382049)
chr1 (28-110)||(20026166-20026249)
chr1 (58-109)||(47892421-47892472)
chr1 (154-208)||(20721054-20721108)
chr1 (21-110)||(47321902-47321991)
chr1 (11-91)||(4458405-4458486)
chr1 (16-131)||(9939719-9939832)
chr1 (147-207)||(8130851-8130911)
chr1 (133-205)||(32088691-32088763)
chr1 (59-99)||(33693032-33693072)
chr1 (141-204)||(41516883-41516946)
chr1 (16-62)||(1233354-1233400)
chr1 (132-202)||(8381882-8381952)
chr1 (144-210)||(14105035-14105101)
chr1 (26-99)||(20720827-20720901)
chr1 (45-107)||(40663000-40663061)
chr1 (12-62)||(52263633-52263683)
chr1 (11-68)||(11817302-11817359)
chr1 (59-100)||(31362239-31362280)
chr1 (132-209)||(49079331-49079408)
chr1 (12-87)||(3416103-3416179)
chr1 (22-109)||(24587910-24588001)
chr1 (22-62)||(27500334-27500374)
chr1 (11-39)||(47053476-47053504)
[»] chr3 (39 HSPs)
chr3 (18-131)||(7717320-7717425)
chr3 (133-218)||(52925729-52925814)
chr3 (12-87)||(31708225-31708301)
chr3 (14-131)||(36302164-36302280)
chr3 (22-107)||(27266790-27266876)
chr3 (28-131)||(35058342-35058445)
chr3 (12-109)||(35264397-35264495)
chr3 (12-131)||(25359560-25359678)
chr3 (136-209)||(39256566-39256639)
chr3 (13-108)||(3776524-3776620)
chr3 (136-208)||(3845233-3845305)
chr3 (12-131)||(5406887-5407003)
chr3 (133-208)||(1441499-1441574)
chr3 (15-83)||(46853523-46853592)
chr3 (17-131)||(37335025-37335138)
chr3 (12-110)||(40147836-40147935)
chr3 (132-209)||(3776430-3776507)
chr3 (11-99)||(35253452-35253541)
chr3 (12-87)||(41596135-41596211)
chr3 (141-209)||(51285450-51285518)
chr3 (42-131)||(44958622-44958710)
chr3 (45-87)||(31492790-31492832)
chr3 (25-131)||(30300997-30301103)
chr3 (59-131)||(44771675-44771745)
chr3 (137-205)||(48089819-48089887)
chr3 (12-110)||(584779-584877)
chr3 (138-209)||(34867309-34867380)
chr3 (12-98)||(38332540-38332627)
chr3 (13-83)||(51285597-51285668)
chr3 (22-87)||(32523336-32523402)
chr3 (17-66)||(43661883-43661933)
chr3 (13-62)||(190875-190924)
chr3 (135-204)||(829786-829855)
chr3 (133-206)||(1290675-1290748)
chr3 (19-87)||(4526155-4526224)
chr3 (17-97)||(52141239-52141320)
chr3 (132-208)||(584909-584985)
chr3 (16-52)||(7262873-7262909)
chr3 (12-87)||(31013041-31013117)
[»] chr5 (25 HSPs)
chr5 (20-129)||(9818717-9818826)
chr5 (11-110)||(6951290-6951390)
chr5 (12-204)||(34250340-34250540)
chr5 (12-110)||(18851068-18851167)
chr5 (22-131)||(36639918-36640026)
chr5 (137-207)||(3043126-3043196)
chr5 (12-110)||(38845443-38845543)
chr5 (132-207)||(15368136-15368211)
chr5 (133-212)||(29922782-29922861)
chr5 (12-110)||(42858108-42858207)
chr5 (22-62)||(10898770-10898810)
chr5 (59-131)||(3970434-3970505)
chr5 (17-110)||(22226227-22226321)
chr5 (136-207)||(10859942-10860013)
chr5 (12-94)||(15368489-15368572)
chr5 (42-99)||(24306112-24306170)
chr5 (42-99)||(24367146-24367204)
chr5 (135-205)||(28973753-28973823)
chr5 (12-65)||(4306558-4306611)
chr5 (19-87)||(28110431-28110500)
chr5 (11-70)||(8591521-8591581)
chr5 (133-193)||(10898629-10898689)
chr5 (136-176)||(37019604-37019644)
chr5 (133-205)||(39097159-39097231)
chr5 (59-99)||(43310574-43310614)
[»] scaffold0361 (2 HSPs)
scaffold0361 (12-110)||(14100-14198)
scaffold0361 (144-211)||(14242-14309)
[»] scaffold0168 (2 HSPs)
scaffold0168 (12-131)||(31807-31928)
scaffold0168 (133-208)||(31718-31793)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 42982654 - 42982418
Alignment:
Q  1 agggaaagtgatttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42982654 agggaaagtgatttggatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttca 42982555  T
Q  100 ggtagaatcaaaattctggaggcaaaatcaatgaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaacca 199  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42982554 agtagaatcaaaattctggaggcaaaatcaatgaaccaaacatgtcaaaatcagttctacatgtttagaattaatttggattcctccaaaagtggaacca 42982455  T
Q  200 aacatacactaaataatattgtttcttagcttgatgt 236  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  42982454 aacatacactaagtaatattgtttcttagctttatgt 42982418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 33019142 - 33019260
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||| ||||||||||||||||||||| || |||||||| ||||| ||||||||||||  || |||||||||||| |||||||||||  || ||||      
T  33019142 tttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatataatc-- 33019239  T
Q  111 aattctggaggcaaaatcaat 131  Q
    |||||| |||||| |||||||    
T  33019240 aattctagaggcagaatcaat 33019260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 42741075 - 42740977
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||| ||||||| |||||||||||||||| ||| |||||||| |||||||| |||||||| |||||||||||||||| |  |||||||| ||||||||||    
T  42741075 tttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaa 42740977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 7629830 - 7629750
Alignment:
Q  132 gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacactaaa 212  Q
    |||||||||||| |||||||| |||||||| | |||||| ||| | |  ||||||||||||||||||||||||||||||||    
T  7629830 gaaccaaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatacactaaa 7629750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 44439353 - 44439231
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagctacaatttctagcttc-aggtagaatca 109  Q
    ||||||||  || |||||||||||||||| |||||||||||| ||| ||||||||||| | |||||||||||| ||| || ||||||| || ||||||||    
T  44439353 tttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatca 44439254  T
Q  110 a-aattctggaggcaaaatcaat 131  Q
    |   |||| ||||||||||||||    
T  44439253 attcttctagaggcaaaatcaat 44439231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 11504053 - 11504146
Alignment:
Q  17 atacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||||||||||||||| || |||| ||||||||| ||| |||||||  |||||||| |||||| | ||| |||  |||||||||||    
T  11504053 atacattcatgtaaaagtgagttgaactataactttgtgtgtgaaaacaattctataatcaaaaactacaaatcctaactttcggtagaatcaa 11504146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 13912886 - 13912790
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaat 107  Q
    |||||||||| |||||||||| ||||||| ||  ||||||||||||| ||||| |||||| |||| ||||  ||||| ||||||||||| |||||||    
T  13912886 tttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaattctagcttcatgtagaat 13912790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 16518877 - 16518760
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaa 111  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||   ||  |  ||||||||||||||| | ||| ||||  ||||||||  |    
T  16518877 tttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaaaagtcatcttataatcaaaagctacaaatcctatcttctagtagaatc--a 16518780  T
Q  112 attctggaggcaaaatcaat 131  Q
    |||||||| |||||| ||||    
T  16518779 attctggaagcaaaaccaat 16518760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 4894147 - 4894242
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaa-aatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||| ||||||||| ||| | |||||||||| || ||| |||||||| | |||||||||||||| |||||||| |||| || |||||||    
T  4894147 gatacattcatttaaaagtgacttgaataataaatttgagtataataatcaattatagaatcaaaagctacgatttctagtttcaagttgaatcaa 4894242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 1976850 - 1976900
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa 62  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||||||    
T  1976850 tttggatacattcatgtaaaagtgagttcaacaataaatttgagtgtaaaa 1976900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 43501222 - 43501125
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||| |||||||||||||||| ||||||| |  |||| ||||||| || ||||||||||  ||||||||||||||| | |||| |||| ||||||||||    
T  43501222 tttgtatacattcatgtaaaactgagttgaattataattttgtgt-tagaatcaattctaaaatcaaaagctacaaatcctagtttcaagtagaatcaa 43501125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 37420196 - 37420391
Alignment:
Q  27 gtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctgga--atcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggca 123  Q
    |||||||||||||| | |||||||||| |||||||| |||||||| ||  || | |||||||| ||||||| |||  ||||||||||  |||| ||||||    
T  37420196 gtaaaagtgagttgaataataaatttgagtgtaaaaatcaattctagagaattagaagctacattttctagattctagtagaatcaa--ttctagaggca 37420293  T
Q  124 aaatcaat-----------gaa-ccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    ||||||||           ||| |||||||||||||||||| |||||||| | |||||| |||||| | || |||||||||||||   ||||||||||    
T  37420294 aaatcaattctactctagggaagccaaacatgtcaaaatcaattctacacctctagaatcaatttgcactcttccaaaagtggaagagaacatacact 37420391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 22536097 - 22535979
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||| |||||||| ||||||  || |||||| ||||||  ||||| ||||||  ||||||||||| ||| |||||  |||| ||||||||      
T  22536097 tttggatacatttatgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagcttcaaattctaaattcaagtagaatc-- 22536000  T
Q  111 aattctggaggcaaaatcaat 131  Q
    ||||||  |||||||||||||    
T  22535999 aattctaaaggcaaaatcaat 22535979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 37649534 - 37649659
Alignment:
Q  73 aatcaaaagctacaatttctagcttcaggt-agaatcaaaattctggaggcaaaatcaatgaaccaaacatgtcaaaatcagttctacacgtttagaatt 171  Q
    ||||||||||| |||||||| |||| | || ||||||||  ||| ||||||||| ||| | || ||||||||||||||||| ||| | || |  |||||     
T  37649534 aatcaaaagcttcaatttcttgctttaagttagaatcaa--ttccggaggcaaagtcagt-aatcaaacatgtcaaaatcaattccatacctcaagaatc 37649630  T
Q  172 aatttggattcctccaaaagtggaaccaa 200  Q
    ||||| || ||||||||||||||||||||    
T  37649631 aattttgactcctccaaaagtggaaccaa 37649659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 5533017 - 5533113
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgta-aaatcaattctggaatcaaaagctacaatttctagcttcaggtagaat 107  Q
    ||||||||| |||||||||| |||||||| |  |||||||| |||||  |||||||||   |||||||||||||||| |  |||||||| |||||||    
T  5533017 tttggatacgttcatgtaaatgtgagttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaatagtagcttcaagtagaat 5533113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 7630244 - 7630204
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  7630244 aaaatcaattctagaatcaaaagctacaatgtctagcttca 7630204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 9943390 - 9943318
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacata 205  Q
    |||||||||||| ||||||| || ||||| || ||||| ||||| | || ||||||| |||||||||||||||    
T  9943390 aaccaaacatgttaaaatcaattttacaccttcagaatcaattttggttgctccaaatgtggaaccaaacata 9943318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 40582718 - 40582650
Alignment:
Q  131 tgaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaacca 199  Q
    |||||||||||||| ||||||| |||||||| | |||||| ||||| |  || ||||||||||||||||    
T  40582718 tgaaccaaacatgttaaaatcaattctacacctctagaatcaattttggctcttccaaaagtggaacca 40582650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 43717307 - 43717235
Alignment:
Q  135 ccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacataca 207  Q
    |||||||||||||||||| |||||||| | |||||| |||||  |  |||||||||||| |||||||| ||||    
T  43717307 ccaaacatgtcaaaatcaattctacacatctagaatcaattttaacacctccaaaagtgaaaccaaacgtaca 43717235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 3476561 - 3476628
Alignment:
Q  144 tcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacactaa 211  Q
    ||||||||| |||||||| | |||||| ||| | |  || ||||||||||||||||||||||||||||    
T  3476561 tcaaaatcaattctacacctctagaataaatatcggctcttccaaaagtggaaccaaacatacactaa 3476628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 9605281 - 9605242
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtg 55  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  9605281 gatacatttatgtaaaagtgagttgaacaataaatttgtg 9605242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 10618957 - 10619045
Alignment:
Q  42 acaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaatcaat 131  Q
    |||| ||||||| |||| |||||||||| | ||||||||||||  ||||||||||||||  |||||||  ||||||  |||||||||||||    
T  10618957 acaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatc--aattctaaaggcaaaatcaat 10619045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 11511046 - 11510934
Alignment:
Q  18 tacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttc-aggtagaatcaaaattct 116  Q
    ||||||||| |||||||| |||| |||||||||||| |  |||||| |||| | ||  ||||| || ||| |||||||||| || ||||||||||  | |    
T  11511046 tacattcatataaaagtgggttgaacaataaatttgaggttaaaataaattgtagaggcaaaaactccaaattctagcttcaagatagaatcaaa--tat 11510949  T
Q  117 ggaggcaaaatcaat 131  Q
    |||||||||||||||    
T  11510948 ggaggcaaaatcaat 11510934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 15220847 - 15220886
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatt 51  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  15220847 tttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 30503260 - 30503192
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaatca 129  Q
    |||||||||||| |||||||||||||| | | || |||||| ||||||||  |||| ||||||||||||||    
T  30503260 aaaatcaattcttgaatcaaaagctacgaatcctggcttcaagtagaatc--aattttggaggcaaaatca 30503192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 3352162 - 3352076
Alignment:
Q  25 atgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||| ||||| |  |||||||||||||| |||||||||| | |||||||||||| ||||| | | ||||| ||| ||||||    
T  3352162 atgtaaaagtaagttgaaacataaatttgtgtgtgaaaatcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaa 3352076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 33502322 - 33502260
Alignment:
Q  26 tgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    ||||||||||||||| || |||||| ||||||| |||||||||| | |||||||||| |||||    
T  33502322 tgtaaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaagttacaa 33502260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 4778516 - 4778439
Alignment:
Q  137 aaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacactaaata 214  Q
    |||||||| || |||| |||||||| | |||||||||||| || |||| ||||| || || ||||||||||| |||||    
T  4778516 aaacatgttaacatcaattctacacttctagaattaattttgactccttcaaaaatgaaatcaaacatacaccaaata 4778439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 21659770 - 21659700
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaatcaat 131  Q
    |||||||||||| |||||| |||||||||||| ||||| |  ||||||  | |||| ||||||||||||||||    
T  21659770 aaaatcaattctagaatcataagctacaatttttagctacgagtagaa--acaattatggaggcaaaatcaat 21659700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 32596090 - 32596009
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttct 92  Q
    |||||||| ||| |||||||||||||||| |  || ||||||| ||| |||||||||| | |||||||||| ||||| ||||    
T  32596090 tttggatatatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaattttagaatcaaaagttacaaattct 32596009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 40401629 - 40401666
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaa 49  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  40401629 tttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 2002718 - 2002799
Alignment:
Q  49 atttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaatcaat 131  Q
    |||||||||||||| |||||| | |||| |||| |||||| | ||||||||| |||||||||    ||||||||||||||||||    
T  2002718 atttgtgtgtaaaaatcaattttagaatgaaaaactacaaatcctagcttcaagtagaatcagg--tctggaggcaaaatcaat 2002799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 3654759 - 3654787
Alignment:
Q  181 tcctccaaaagtggaaccaaacatacact 209  Q
    |||||||||||||||||||||||||||||    
T  3654759 tcctccaaaagtggaaccaaacatacact 3654787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 8800684 - 8800760
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgt-gtaaaatcaattctggaatcaaaagctacaa 87  Q
    ||||||||| ||||||||||||||||||| |  |||||||||| |  ||||||||||| | || ||||||| |||||    
T  8800684 tttggatacgttcatgtaaaagtgagttgaattataaatttgtatattaaaatcaattatagattcaaaagttacaa 8800760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 13238899 - 13238847
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatc 64  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| ||||||||||    
T  13238899 tttggataagttcatgtgaaagtgagttgaaaaataaatttgagtgtaaaatc 13238847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 16519400 - 16519348
Alignment:
Q  146 aaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaacc 198  Q
    ||||||| |||||||| | |||||| ||||| | |||||||||||||||||||    
T  16519400 aaaatcaattctacacctctagaatcaattttgcttcctccaaaagtggaacc 16519348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 33047568 - 33047644
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    |||||||||||| ||||||||||||| || ||  ||||||| | ||| ||||||| ||||  |||||||||||||||    
T  33047568 tttggatacatttatgtaaaagtgaggtgaaccgtaaatttttctgtgaaaatcatttctaaaatcaaaagctacaa 33047644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 34620985 - 34620782
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||| |||||||||||||||| | |||||||||  |||||||| |||||||| |||||| ||||||  ||||||||||||| ||||||||      
T  34620985 tttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatgtagaatc-- 34620888  T
Q  111 aattctggaggcaaaatcaat------------gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaacc 198  Q
    ||||| ||||||||||| |||            ||||||||||||||||||||| |||||||| |||||||| ||||| |  |||||||||||||||||     
T  34620887 aattccggaggcaaaattaattctagtttataggaaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaacg 34620788  T
Q  199 aaacat 204  Q
    ||||||    
T  34620787 aaacat 34620782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 34748422 - 34748219
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||| |||||||||||||||| | |||||||||  |||||||| |||||||| |||||| ||||||  ||||||||||||| ||||||||      
T  34748422 tttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatgtagaatc-- 34748325  T
Q  111 aattctggaggcaaaatcaat------------gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaacc 198  Q
    ||||| ||||||||||| |||            ||||||||||||||||||||| |||||||| |||||||| ||||| |  |||||||||||||||||     
T  34748324 aattccggaggcaaaattaattctagtttataggaaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaacg 34748225  T
Q  199 aaacat 204  Q
    ||||||    
T  34748224 aaacat 34748219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 1485132 - 1485231
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||| | |||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||||| |||||||||| |||| ||||||||||    
T  1485132 tttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaagtagaatcaa 1485231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 4911007 - 4910908
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||| |||||||||||||| | || |||||||||| ||| |||||||||||| |||||||||||||||| |  |||||||| ||||||||||    
T  4911007 tttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaa 4910908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 852623 - 852517
Alignment:
Q  20 cattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctgg 118  Q
    ||||||||||||||||||||  |||||| ||||| |||||||| |||||||| |||||| || |||||||||||||||||| || |||||  |||| |||    
T  852623 cattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaatcagaacctacaatttctagcttcaagttgaatc--aattatgg 852526  T
Q  119 aggcaaaat 127  Q
    |||||||||    
T  852525 aggcaaaat 852517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 31305833 - 31305921
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgta-aaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||||| ||| ||||||||||||||||  ||||||||||| ||||| ||||||||||| |||||||||||| |||||| ||||||||    
T  31305833 tttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttca 31305921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 17225947 - 17225872
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaattt 90  Q
    ||||||||||||||||| ||||||| || |||||||||| ||| |||||||||||| |||||||||||||||||||    
T  17225947 gatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaattt 17225872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 2234614 - 2234496
Alignment:
Q  13 ttggatacattcatgtaaaagtgagttgtacaa-taaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||| |||||| ||||||||| |||| |||||||| |||| |||||||||||| |||||||||||| || ||| |||||||| || |||||      
T  2234614 ttggatacatttatgtaatagtgagttgaacaaataaatttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagttgaatc-- 2234517  T
Q  111 aattctggaggcaaaatcaat 131  Q
    |||| || |||||||||||||    
T  2234516 aattttgaaggcaaaatcaat 2234496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 26280691 - 26280586
Alignment:
Q  25 atgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggca 123  Q
    |||||||||||||||  || ||||||||||  |||||| |||||| ||||||||||| |||||| ||||||||||| || |||||  |||||| ||||||    
T  26280691 atgtaaaagtgagtttaactataaatttgtacgtaaaaatcaattttggaatcaaaaactacaaattctagcttcaagtggaatc--aattcttgaggca 26280594  T
Q  124 aaatcaat 131  Q
    ||||||||    
T  26280593 aaatcaat 26280586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 29240575 - 29240646
Alignment:
Q  138 aacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    ||||||||||||||| || ||||| | |||||| ||||| |||||| |||||||||||||||||||||||||    
T  29240575 aacatgtcaaaatcaattttacacctctagaatcaattttgattcccccaaaagtggaaccaaacatacact 29240646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 5724626 - 5724823
Alignment:
Q  22 ttcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggag 120  Q
    ||||| ||||||||||||  |  ||| |||||||||| |||||||||| | |||| ||||| ||||| | ||||||||| ||||||||  |||| |||||    
T  5724626 ttcatataaaagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatc--aattttggag 5724723  T
Q  121 gcaaaatcaa-------tgaa-----ccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacac 208  Q
    ||||||||||       ||||     |||||||||||| ||||| |||||||| | |||||||||||| |   |||| | ||||||||||||||||||||    
T  5724724 gcaaaatcaattctacctgaaagcatccaaacatgtcagaatcaattctacacttctagaattaattttggcccctctagaagtggaaccaaacatacac 5724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 3482145 - 3482069
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    |||| |||||||||||||||||| ||||| || ||||| |||||||| ||||||||||||  ||||||| |||||||    
T  3482145 tttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaa 3482069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 10400814 - 10400890
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    |||||||||| ||||||||| || ||||| | |||||| ||||| |  |||||||| ||||||||||||||||||||    
T  10400814 aaccaaacatatcaaaatcaattatacacctctagaatcaattttgcatcctccaagagtggaaccaaacatacact 10400890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 10874576 - 10874475
Alignment:
Q  29 aaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaat 127  Q
    |||||||||||| ||| ||| ||||  ||||||| |||||||| ||||||||||||  |||||||||||| | ||  ||  |||||||||||||||||||    
T  10874576 aaaagtgagttgaacactaagtttgaatgtaaaaatcaattctagaatcaaaagctctaatttctagctttatgt--aagaaaaattctggaggcaaaat 10874479  T
Q  128 caat 131  Q
    ||||    
T  10874478 caat 10874475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 25388176 - 25388077
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatca 109  Q
    ||||||||| ||| |||||||||||||||| |||||||||||| |||| ||||||||||||  |||||||  || |||||||| | ||||  ||||||||    
T  25388176 atttggatatatttatgtaaaagtgagttg-acaataaatttgagtgtcaaaatcaattctaaaatcaaagacttcaatttcttgtttcaattagaatca 25388078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 34027407 - 34027475
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagct 83  Q
    |||| |||||||||| ||||||||| | |||||||||| |||||||| |||||||| ||||||||||||    
T  34027407 gatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 6895940 - 6896035
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||||| ||   | ||||||  |||||  ||||| |||||| |||||||||||||||| | ||| ||||||||||||||||    
T  6895940 gatacattcatgtaaaagtgaatttatctataaatacgtgtgcgaaaataaattctagaatcaaaagctacaaatcctaacttcaggtagaatcaa 6896035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 9505860 - 9505781
Alignment:
Q  21 attcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    ||||||||||||||| |||| |||||||||||| || | |||||||||  | |||||||||||| ||||||||| |||||    
T  9505860 attcatgtaaaagtgtgttgaacaataaatttgagtttaaaaatcaatcatagaatcaaaagctccaatttctatcttca 9505781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 16540206 - 16540107
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||| |||||||||||||||  || |||||| |||  || ||| |||||||   ||||||||||||||| | ||||||||| ||||||||||    
T  16540206 tttggatacattgatgtaaaagtgagtttaactataaatatgtaagtgaaactcaattcaataatcaaaagctacaaatcctagcttcaagtagaatcaa 16540107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 882785 - 882687
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatca 109  Q
    |||||||||||||||| |||||||||||  ||||||||||||  ||| |||||||||| | |||||| || ||| | | | |||||||| |||||||||    
T  882785 tttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatttttgaatcagaacctagactgtttagcttcaagtagaatca 882687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 25195947 - 25195876
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgta-aaatcaattctggaatcaaaagcta 84  Q
    |||||||||||| ||||||  |||||||| || ||||||||||||||| || |||||||| |||||||||||||    
T  25195947 tttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 25195876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 31812276 - 31812203
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatac 206  Q
    |||||||||||||||||||| ||||| || | || ||| ||||| | || ||||||||||| ||||||||||||    
T  31812276 aaccaaacatgtcaaaatcaattctagacctctataatgaattttgcttactccaaaagtgaaaccaaacatac 31812203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 7952728 - 7952809
Alignment:
Q  45 ataaatttgtgtgtaaaatc-aattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaat 127  Q
    |||||||||||||| ||| | |||||| |||||||||||||||| | || |||||| |||||||  ||||| ||||||||||||    
T  7952728 ataaatttgtgtgtgaaacccaattctagaatcaaaagctacaaatcctcgcttcaagtagaat--aaattttggaggcaaaat 7952809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 8855015 - 8854902
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaatt 114  Q
    |||||||| |||||||||| ||||  || |||||||||| ||||||| ||||||||  | |||||| |||||| || |||||||| ||||||  | ||||    
T  8855015 gatacattaatgtaaaagtaagttcaaccataaatttgtatgtaaaaatcaattctatagtcaaaaactacaaattgtagcttcatgtagaa--acaatt 8854918  T
Q  115 ctggaggcaaaatcaa 130  Q
    || |||| ||||||||    
T  8854917 cttgaggtaaaatcaa 8854902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 8860599 - 8860527
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    |||||||||||| |||||||||||| || |||||||| ||||| ||||||||||||  | | |||||||||||    
T  8860599 gatacattcatgcaaaagtgagttgaaccataaatttatgtgtcaaaatcaattcttaacttaaaagctacaa 8860527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 30926765 - 30926852
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||| ||| ||||||| |||||| | ||| |||||||||||| |||||||| |||||||| |||| |||| || |||||||||||||||    
T  30926765 tttgaatatattcatgcaaaagtaa-ttgaacaataaatttgagtgtaaaaatcaattctagaataaaaaactccaatttctagcttca 30926852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 33136601 - 33136677
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaa-tttggattcctccaaaagtggaaccaaacatacacta 210  Q
    |||||||||||||||||||| || ||||| | ||||||||| ||||| ||  |||||||||| ||||||| ||||||||    
T  33136601 aaccaaacatgtcaaaatcaattatacacctctagaattaattttggctt--tccaaaagtgaaaccaaatatacacta 33136677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 33997165 - 33997098
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaa 200  Q
    |||||||||||||||||||  ||||| |  | |||||| ||||| | |||||||||||||||||||||    
T  33997165 aaccaaacatgtcaaaatcgattctaaatctctagaatcaattttggttcctccaaaagtggaaccaa 33997098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 947661 - 947594
Alignment:
Q  15 ggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaa-aatcaattctggaatcaaaagct 83  Q
    |||||||||||||||||||||||||| |  ||||  |||||| ||| |||||||||| ||||||||||||    
T  947661 ggatacattcatgtaaaagtgagttgaattataa--ttgtgtttaagaatcaattctagaatcaaaagct 947594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 24982392 - 24982342
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa 62  Q
    |||| |||||||||||||||||| ||||| |||| ||||||| ||||||||    
T  24982392 tttgtatacattcatgtaaaagtaagttgaacaaaaaatttgagtgtaaaa 24982342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 25195352 - 25195468
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||| |||||||||||||||| |   ||||||||||| | |||||||||| | |||| |||| |||||| | |  |||||| ||||||||      
T  25195352 tttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatc-- 25195447  T
Q  111 aattctggaggcaaaatcaat 131  Q
    ||||| ||||||| |||||||    
T  25195448 aattccggaggcagaatcaat 25195468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 31303166 - 31303120
Alignment:
Q  136 caaacatgtcaaaatcagttctacacgtttagaattaatttggattc 182  Q
    |||||||||||||||||||| ||||| |||| ||||||||| |||||    
T  31303166 caaacatgtcaaaatcagttttacacatttataattaattttgattc 31303120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 34898791 - 34898697
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaat-caaaagctacaatttctagcttcaggtagaatc 108  Q
    ||||||||  ||| ||||||||||| |||||||||| | ||| ||||||||||||| ||||  |||| ||  |||||||||||||| ||||||||    
T  34898791 gatacatttgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaataaaaaaactctaatttctagcttcaagtagaatc 34898697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 765422 - 765471
Alignment:
Q  61 aatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||| |||||||||||||||| |  |||||||| ||||||||||    
T  765422 aatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaa 765471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 6654076 - 6654194
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||| | || ||||| |||||  ||| || |||||||| ||||| |||||||| ||| |||| ||||||||||| | ||||||||| |||||||       
T  6654076 tttggattcgtttatgtagaagtggtttgaactataaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaat--t 6654173  T
Q  111 aattctggaggcaaaatcaat 131  Q
    ||||||| ||| |||||||||    
T  6654174 aattctgaaggaaaaatcaat 6654194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 7952520 - 7952443
Alignment:
Q  132 gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    ||||||||||||| ||||||||||||| || | |||| | ||| | | |||||||||||| |||| |||||| |||||    
T  7952520 gaaccaaacatgtgaaaatcagttctaaacctctagagtcaatgttggttcctccaaaagaggaaacaaacacacact 7952443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 7263030 - 7262966
Alignment:
Q  141 atgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacata 205  Q
    |||||||||||| |||||||| | |||||| ||||| |  || || |||||||||||||||||||    
T  7263030 atgtcaaaatcaattctacacttctagaatcaattttgcctcatctaaaagtggaaccaaacata 7262966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 8856406 - 8856362
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgt 56  Q
    ||||||||||||||||| ||||||||||| |  ||||||||||||    
T  8856406 tttggatacattcatgtgaaagtgagttgaaacataaatttgtgt 8856362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 34911035 - 34910970
Alignment:
Q  21 attcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    |||||||||||||| ||||  || ||||  |||||||| |||||||||||| ||||||||||||||||    
T  34911035 attcatgtaaaagttagttaaactataa--ttgtgtgtcaaaatcaattctagaatcaaaagctacaa 34910970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 32818356 - 32818474
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||  |||||||      
T  32818356 tttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatc-- 32818453  T
Q  111 aattctggaggcaaaatcaat 131  Q
    |||||||||||||||||||||    
T  32818454 aattctggaggcaaaatcaat 32818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 55927756 - 55927874
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||| |  ||||||||| |||||| |||||||||||| |||| ||| || |||||      
T  55927756 tttggatacattcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaatcagaagctacaatttttagcctcaagtggaatc-- 55927853  T
Q  111 aattctggaggcaaaatcaat 131  Q
    ||||||| |||||||||||||    
T  55927854 aattctgaaggcaaaatcaat 55927874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 10185293 - 10185205
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaa-atcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||||||||| |||||||||||||||  |||||||||||| ||||||| ||||||| | |||||||||||| ||||||||| |||||    
T  10185293 tttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagcttcaatttctaccttca 10185205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 8604608 - 8604707
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||||||||  ||  || |||||||||||||| |||||||||||| ||||| |||||||||| |  |||||||| ||||||||||    
T  8604608 tttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatcaa 8604707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 16552053 - 16551959
Alignment:
Q  13 ttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatc 108  Q
    |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||  |||| |||||| | ||||||||| | ||||||    
T  16552053 ttggatacattcatgtaaaagtgagttgaactataaatttgtgtg-aaaatcaattctagaactaaaaactacaaatcctagcttcaaggagaatc 16551959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 35065162 - 35065044
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||||||||||| |    |||||||||||||| |||||||||||| ||||||||||  |||| | ||||||||| ||| ||||      
T  35065162 tttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatcaaaagtcacaaatactagcttcaagtaaaatc-- 35065065  T
Q  111 aattctggaggcaaaatcaat 131  Q
    |||| | ||||||||||||||    
T  35065064 aattattgaggcaaaatcaat 35065044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 4243486 - 4243406
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttc 91  Q
    |||||| ||||| |||||||||||||| | |||||||||||| |||| |||||||||||| |||||||||||| |||||||    
T  4243486 tttggagacattgatgtaaaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagctccaatttc 4243406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 33844067 - 33843988
Alignment:
Q  21 attcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||||||||| | ||||| |||||||||||| |||| |||||||||| | |||||||||||| |||||||||||||||    
T  33844067 attcatgtaaaaataagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagcttca 33843988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 9064324 - 9064231
Alignment:
Q  18 tacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||| |||||||||||||||| ||  |||| ||| |||| |||||||||||| ||||||||| |||||| |||||| |||| ||||||||||    
T  9064324 tacatttatgtaaaagtgagttgaaccgtaaacttgagtgtgaaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaa 9064231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 21691198 - 21691274
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    |||||||| ||||||||||||||| |||| || |||||||||||||| ||||||||||||  || ||||||||||||    
T  21691198 tttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaa 21691274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 22250326 - 22250230
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgt-gtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaa 106  Q
    |||||||||||||||||||||||||| | | |||||||||||| ||  ||||| |||||   |||||||||||| |||||||| |||||| ||||||    
T  22250326 atttggatacattcatgtaaaagtgaatcgaacaataaatttgagtattaaaagcaatttcagaatcaaaagcttcaatttcttgcttcaagtagaa 22250230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 9134706 - 9134591
Alignment:
Q  13 ttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaa 112  Q
    |||||||||||||| ||||||  | |||  | ||||||||||||| ||||||||||||  ||||||||||||||| || |||||||| |||| |||  ||    
T  9134706 ttggatacattcatttaaaagcaaattgagctataaatttgtgtg-aaaatcaattctaaaatcaaaagctacaaattttagcttcaagtaggatc--aa 9134610  T
Q  113 ttctggaggcaaaatcaat 131  Q
    ||||||| | |||||||||    
T  9134609 ttctggaagtaaaatcaat 9134591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 46344820 - 46344935
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaa 111  Q
    |||||||||||| |||||||||||||| | ||  |||||||||||  ||||||| |||  ||||||||||||  || ||||| ||||| |||||||   |    
T  46344820 tttggatacatt-atgtaaaagtgagtcgaactttaaatttgtgttaaaaatcacttccagaatcaaaagctggaaattctaacttcaagtagaat---a 46344915  T
Q  112 attctggaggcaaaatcaat 131  Q
    ||| ||||||||||||||||    
T  46344916 attatggaggcaaaatcaat 46344935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 45011973 - 45011897
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    |||| |||||||||| |||||||||||   |  |||||||||||||| |||||||||||| ||||||||||||||||    
T  45011973 tttgaatacattcatataaaagtgagtaaaattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaa 45011897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 29904327 - 29904232
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaa-atcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||| ||||| |||| ||||| ||| |||||||||||| ||||||| |||| |||| |||| | |||||||||||||| |||| | ||||||||||    
T  29904327 gatatattcaagtaatagtgaattgaacaataaatttgagtgtaaacatcagttctagaattagaagctacaatttcttgctttaagtagaatcaa 29904232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 47596416 - 47596490
Alignment:
Q  136 caaacatgtcaa-aatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    |||||||||||| ||||| |||| ||| |||| ||| ||||| |||||||||||||||| ||||| |||||||||    
T  47596416 caaacatgtcaacaatcaattctccacctttaaaatcaattttgattcctccaaaagtgaaaccatacatacact 47596490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 2635127 - 2635054
Alignment:
Q  136 caaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    ||||||||||||||||| || ||||| | |||||| ||||| | | |||| ||||||| |||||||||||||||    
T  2635127 caaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaacatacact 2635054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 50061630 - 50061732
Alignment:
Q  28 taaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaa 126  Q
    |||||| |||||| || ||||| || ||||| |||||||| ||| ||||||||| |||||| | ||| ||||| ||||||||||  || |||||||||||    
T  50061630 taaaagcgagttgaaccataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaa--ttttggaggcaaaa 50061727  T
Q  127 tcaat 131  Q
    |||||    
T  50061728 tcaat 50061732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 2635215 - 2635146
Alignment:
Q  58 taaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaatca 129  Q
    ||||||||||||| || ||||||||| |||| |||||||||| | | ||||  |||||||||||||||||||    
T  2635215 taaaatcaattctagactcaaaagctccaatctctagcttcaagcataatc--aattctggaggcaaaatca 2635146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 1616489 - 1616391
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaa-aatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||| |||||||||||||||| ||||||| ||  ||||  |||||||   |||||||||| |||||||||||||||| || |||||| | ||||||||||    
T  1616489 tttgaatacattcatgtaaaaatgagttgaactttaaacatgtgtgtgggaatcaattctagaatcaaaagctacaaattgtagctt-aagtagaatcaa 1616391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 41058891 - 41058821
Alignment:
Q  135 ccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacata 205  Q
    |||||||||||| ||||| |||||| | |||||||| ||||| |  || || |||||||||||||||||||    
T  41058891 ccaaacatgtcacaatcaattctactcctttagaatcaatttaggctcatctaaaagtggaaccaaacata 41058821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 45694713 - 45694643
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaag 81  Q
    ||||||||||||||||||||| ||||||  || |||||| |||||| || |||||||||| |||| |||||    
T  45694713 tttggatacattcatgtaaaaatgagttcaactataaatgtgtgtgttagaatcaattctagaattaaaag 45694643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 26617519 - 26617449
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaatcaat 131  Q
    |||||||||| |  ||||||||||||||  ||||||||||| ||||||||  | || ||||||||||||||||    
T  26617519 aaaatcaattttataatcaaaagctacagattctagcttcaagtagaatc--atttttggaggcaaaatcaat 26617449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 32100378 - 32100341
Alignment:
Q  25 atgtaaaagtgagttgtacaataaatttgtgtgtaaaa 62  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  32100378 atgtaaaagtgagttgaacaataaatttgagtgtaaaa 32100341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 37439221 - 37439156
Alignment:
Q  35 gagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||| |||||||| ||| |||||||| |||||| | |||| |||||||| ||||||||||||||    
T  37439221 gagttgaacaataaaattgagtgtaaaaatcaattatagaattaaaagctataatttctagcttca 37439156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 8330167 - 8330127
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||||||| | |||||||||||| |||||||||||||||    
T  8330167 aaaatcaattatagaatcaaaagctccaatttctagcttca 8330127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 25927406 - 25927331
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaa 87  Q
    |||| |||||||||| |||||||||| |||  | |||||||| |||  ||||||||||||| ||||| |||||||||    
T  25927406 atttcgatacattcacgtaaaagtgaattgagccataaatttatgta-aaaatcaattctgaaatcataagctacaa 25927331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 47144313 - 47144273
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaattt 52  Q
    ||||||||||||||| ||||||| ||||| |||||||||||    
T  47144313 tttggatacattcatctaaaagttagttggacaataaattt 47144273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 32927991 - 32927892
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||  ||||||||||||||| | ||||||||| ||||||||||    
T  32927991 tttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaa 32927892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 35495089 - 35494989
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaat-caattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||| |||||||||||||| ||||| || ||| ||||||||||||||  ||||||| |||||||||||||||| | ||||||||| ||||||||||    
T  35495089 tttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagcttcatgtagaatcaa 35494990  T
Q  111 a 111  Q
    |    
T  35494989 a 35494989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 13384653 - 13384739
Alignment:
Q  25 atgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||||||| || |||||||||||||| |||||||||||| |||||||||||||||| || ||||||||  |||||||||    
T  13384653 atgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaa 13384739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 4662889 - 4663007
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||||| | ||||| |||||| || ||| |||||||||||||| |||||||| ||| |||||||||||| | ||||||||| |||||||  |    
T  4662889 tttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaagtagaat--a 4662986  T
Q  111 aattctggaggcaaaatcaat 131  Q
    ||||| ||| |||||||||||    
T  4662987 aattccggatgcaaaatcaat 4663007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 26100132 - 26100220
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    ||||||| |||| |||||||||||||||| || |||||||||||||| |||||||||| | |||||||||||||||| | |||||||||    
T  26100132 tttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttca 26100220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 16972050 - 16972168
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||  ||| |||| |||||| |||||||||||  || ||||      
T  16972050 tttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactacaaattctagcttcaaatacaatc-- 16972147  T
Q  111 aattctggaggcaaaatcaat 131  Q
    || |||| |||||||||||||    
T  16972148 aactctgaaggcaaaatcaat 16972168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 37684504 - 37684386
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||| |||||||||||||||| |  |||||||| ||  | |||||||||| | ||||||||||| |||| | ||| ||||| ||||||||      
T  37684504 tttggatacatttatgtaaaagtgagttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagtagaatc-- 37684407  T
Q  111 aattctggaggcaaaatcaat 131  Q
    |||||||||| ||||||||||    
T  37684406 aattctggagacaaaatcaat 37684386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 15677810 - 15677901
Alignment:
Q  21 attcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa--tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||| | ||||||| || ||||||||||||||||||  ||||||||  |||||||||||| || | ||||||||| ||||||||||    
T  15677810 attcatgtaacaatgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaa 15677901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 35495223 - 35495151
Alignment:
Q  137 aaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    |||||||||||||||| |||||||| | |||||| ||||| |  | |||||||||||||||||||||||||||    
T  35495223 aaacatgtcaaaatcaattctacacttgtagaatcaattttgggtgctccaaaagtggaaccaaacatacact 35495151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 36448078 - 36448006
Alignment:
Q  136 caaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacac 208  Q
    ||||||||||||||| | |||||||| |||||||| ||||| || | ||| ||||||||||||||||||||||    
T  36448078 caaacatgtcaaaatgaattctacacatttagaatcaatttagacttctcaaaaagtggaaccaaacatacac 36448006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 38868598 - 38868498
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatca 109  Q
    |||| ||||||||  ||||||| ||||||| || |||||||||||||| |||||||||| | ||| |||||||||||| |  |||||||| |||||||||    
T  38868598 atttagatacattattgtaaaattgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatca 38868499  T
Q  110 a 110  Q
    |    
T  38868498 a 38868498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 32767488 - 32767413
Alignment:
Q  12 tttggatacattcatgt--aaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagcta 84  Q
    |||||||||||||||||  |||||||||||| |||||||||||  |||||||| ||| |||| |||||||||||||    
T  32767488 tttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaatcaaaagcta 32767413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 32736562 - 32736511
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa 62  Q
    ||||| |||||||||||||||||||| ||| || ||||||||||||||||||    
T  32736562 atttgaatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaa 32736511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 32994236 - 32994327
Alignment:
Q  20 cattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||| | ||| || |||||||||||| ||||| |||||||| || |||||||||| || |  |||||||| ||||||||||    
T  32994236 cattcatgtaaaagtcatttgcactataaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaatcaa 32994327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 5859057 - 5859118
Alignment:
Q  20 cattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaa 80  Q
    ||||||||||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||    
T  5859057 cattcatgtaaaagtgagttgaaccataaaattgtgtgtaaaaatcaattcaggaataaaaa 5859118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 38335850 - 38335923
Alignment:
Q  15 ggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    |||||||||||||||||||||||||  |  ||||||||||| || ||||||||||||  |||||||||| ||||    
T  38335850 ggatacattcatgtaaaagtgagttagaatataaatttgtgcgtaaaaatcaattctaaaatcaaaagcaacaa 38335923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 39648263 - 39648340
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacacta 210  Q
    |||||||||||||||||||| || ||||  | |||||| ||||| || ||||| ||||||| ||||||||||| ||||    
T  39648263 aaccaaacatgtcaaaatcaattatacatctctagaatcaattttgactcctctaaaagtgtaaccaaacatatacta 39648340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 44141052 - 44141154
Alignment:
Q  28 taaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaa 126  Q
    |||||| |||||| || ||||| || ||||| |||||||| ||| ||||||||| |||||| | ||| ||||| ||||||||||  || |||||||||||    
T  44141052 taaaagcgagttgaactataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaa--ttttggaggcaaaa 44141149  T
Q  127 tcaat 131  Q
    |||||    
T  44141150 tcaat 44141154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 30099004 - 30098921
Alignment:
Q  15 ggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    ||||| ||| |||||||||||||||  || |||||||| |||  ||||| |||||| ||||| |||||||||| |||||||||||    
T  30099004 ggatatatttatgtaaaagtgagttaaactataaatttttgta-aaaattaattctagaatcgaaagctacaaattctagcttca 30098921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 4554474 - 4554399
Alignment:
Q  132 gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacataca 207  Q
    ||||||||  ||||||||| | |||||||| | |||||| |||||||  |||||||||||||  ||||||||||||    
T  4554474 gaaccaaatctgtcaaaatgaattctacacttctagaatcaatttgggctcctccaaaagtgataccaaacataca 4554399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 38537357 - 38537457
Alignment:
Q  25 atgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggca 123  Q
    ||||||| ||| |||| |||||| ||||| |||| |||||||| ||| |||||| ||| |||| |||||||||||| ||||||  | |||| ||||||||    
T  38537357 atgtaaaggtgtgttgaacaatacatttgagtgtgaaaatcaactctagaatcagaaggtacagtttctagcttcaagtagaa--acaattttggaggca 38537454  T
Q  124 aaa 126  Q
    |||    
T  38537455 aaa 38537457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 9695435 - 9695477
Alignment:
Q  21 attcatgtaaaagtgagttgtacaataaatttgtgtgtaaaat 63  Q
    |||||||||||||||||||| | |||||||||| |||||||||    
T  9695435 attcatgtaaaagtgagttgaagaataaatttgagtgtaaaat 9695477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 3279069 - 3279028
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttg 53  Q
    |||||||| |||||||||||||||||||| ||| ||||||||    
T  3279069 tttggatatattcatgtaaaagtgagttgaacattaaatttg 3279028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 8252762 - 8252721
Alignment:
Q  135 ccaaacatgtcaaaatcagttctacacgtttagaattaattt 176  Q
    ||||||||||||||||||||||||||| | |||||| |||||    
T  8252762 ccaaacatgtcaaaatcagttctacacctctagaatcaattt 8252721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 13418815 - 13418904
Alignment:
Q  22 ttcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||| ||| ||||||| || |||||||||  ||| |||||||||| |||||||||||||| | ||||||  ||| | ||||||||||    
T  13418815 ttcatgttaaattgagttgaacgataaatttgaatgttaaaatcaattatggaatcaaaagctccgatttcttactttaagtagaatcaa 13418904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 32056331 - 32056259
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatac 206  Q
    |||||||| ||||||| || ||||||||| | |||||| ||||| | ||||| |||||||| ||||||||||||    
T  32056331 aaccaaacttgtcaaa-tctgttctacacatctagaatcaattttggttccttcaaaagtgaaaccaaacatac 32056259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 35495359 - 35495241
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||  ||||||||| ||| |||||||||||| || | |||||||||| | |||||| || ||| |   | |||||||| ||||||||      
T  35495359 tttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatagaatcagaatctagatagtgtagcttcaagtagaatc-- 35495262  T
Q  111 aattctggaggcaaaatcaat 131  Q
    |||||| |||||||||| |||    
T  35495261 aattctagaggcaaaattaat 35495241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 38868843 - 38868766
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    ||||| |||| ||||||||||||||||| | || ||||||||||| || |||||||||| | |||| |||| ||||||    
T  38868843 atttgaatacgttcatgtaaaagtgagtagaactataaatttgtgcgtgaaaatcaattatagaataaaaaactacaa 38868766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 2764454 - 2764494
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatt 51  Q
    ||||||||||||||| |||||||||||||| || |||||||    
T  2764454 atttggatacattcacgtaaaagtgagttgaaccataaatt 2764494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 18355835 - 18355922
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||||||||||  |||||||| |||||| ||  |||||||||||  |||||||||| | ||||||||||  |||| | |||||||||    
T  18355835 atttggatacatttgtgtaaaagggagttgaactttaaatttgtgt-aaaaatcaattttagaatcaaaagacacaaatcctagcttca 18355922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 24776211 - 24776283
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacata 205  Q
    |||||||||| ||||||||| ||||||||    ||||| ||||| |  || ||||||||||||||||||||||    
T  24776211 aaccaaacatatcaaaatcaattctacaccccgagaatcaatttcgcctcttccaaaagtggaaccaaacata 24776283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 32101170 - 32101130
Alignment:
Q  14 tggatacattcatgtaaaagtgagttgtacaataaatttgt 54  Q
    |||||||||| |||||||||||||||| || ||||||||||    
T  32101170 tggatacatttatgtaaaagtgagttgaactataaatttgt 32101130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 38123659 - 38123751
Alignment:
Q  19 acattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||||||  ||||||||||| |||||||| |||||||| |||| | ||||||||||||||||||||| ||||||||||    
T  38123659 acattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttcaagtagaatcaa 38123751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 27571960 - 27571843
Alignment:
Q  13 ttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaa 111  Q
    ||||||||||| ||||||| |||||||| | |||||| ||| |||| |||||||||||| |||||||||||| ||||||||| ||||| ||||||||  |    
T  27571960 ttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaatc--a 27571863  T
Q  112 attctggaggcaaaatcaat 131  Q
    ||||| |||| |||||||||    
T  27571862 attcttgaggtaaaatcaat 27571843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 40491677 - 40491559
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||||||||||||  ||  ||||||||||||||||| |||||||| ||||||||||||||||    || ||||| ||||| ||      
T  40491677 tttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaagctacaaaacttaacttcaagtagagtc-- 40491580  T
Q  111 aattctggaggcaaaatcaat 131  Q
    ||||||| |||||||||||||    
T  40491579 aattctgaaggcaaaatcaat 40491559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 41386795 - 41386900
Alignment:
Q  6 aagtgatttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaa-atcaattctggaatcaaaagctacaatttctagcttcaggtag 104  Q
    ||||||||||  ||| |||||| |||||||||||| |  ||||||||||||||||| ||||||||| |||| ||||||||||| | ||||||||| ||||    
T  41386795 aagtgatttgtttacgttcatgcaaaagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtag 41386894  T
Q  105 aatcaa 110  Q
    ||||||    
T  41386895 aatcaa 41386900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 40561744 - 40561843
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgta-aaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||||||||||||| |||||| ||||| ||||| |||| |||||| || | | || |||||||||||| ||||| ||||||||||    
T  40561744 tttggatacattcatgtaaaagtgagttgaacaatatatttgagtgtataaattaattctagacttacaaactacaatttctaacttcaagtagaatcaa 40561843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 45557464 - 45557377
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttc 98  Q
    |||||||||||||||||||||||||||||  | | |||||||||||| ||||||||| || |||| ||||||||||  ||||||||||    
T  45557464 tttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatcctagaattaaaagctacagattctagcttc 45557377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 597942 - 598030
Alignment:
Q  22 ttcatgtaaaagtgagttgtacaataaatttgtgtgtaa-aatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||| |||||||||||  ||| || |||||||| | ||||| ||||||||||||| |||||||| ||||||||||    
T  597942 ttcatgtaaaagtgagttgaacaataaattttagtgcaagaatcaattatagaatcgaaagctacaattt-tagcttcaagtagaatcaa 598030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 30182312 - 30182381
Alignment:
Q  42 acaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||| |||||||| | |||||| ||||||||||||||||||| |||||||| ||||||||||    
T  30182312 acaataaatttgagtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaagtagaatcaa 30182381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 45005115 - 45005001
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaatt 114  Q
    |||| ||| |||||||||||||||| | |||||||||| ||| ||| |||||||||  |||||||  || |||||| |||||||| ||||||||  ||||    
T  45005115 gatatatttatgtaaaagtgagttgaataataaatttgagtgctaagatcaattctataatcaaagcctccaatttttagcttcaagtagaatc--aatt 45005018  T
Q  115 ctggaggcaaaatcaat 131  Q
    ||| |||||||||||||    
T  45005017 ctgaaggcaaaatcaat 45005001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 38123765 - 38123836
Alignment:
Q  132 gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaaca 203  Q
    ||||||||||||| ||||||| |||||||  | |||||| ||||| |  |||||||||||||||||||||||    
T  38123765 gaaccaaacatgttaaaatcaattctacatctctagaatcaattttggctcctccaaaagtggaaccaaaca 38123836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 41788415 - 41788316
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||| ||||||| || ||||||||||||| |||  ||||||| |||| |||||||||| | || ||||||| | ||||||||||||| | ||||||||||    
T  41788415 tttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattatagactcaaaagtttcaatttctagctttaagtagaatcaa 41788316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 15050259 - 15050184
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    ||||||||| |||||||||| |||| ||| | |||||| ||||| |  ||||||||| |||||||||||||||||||    
T  15050259 aaccaaacaggtcaaaatcaattcttcacttctagaatcaattttggctcctccaaa-gtggaaccaaacatacact 15050184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 40795976 - 40796047
Alignment:
Q  13 ttggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagct 83  Q
    |||||||||||||||||||||||| ||| | | |||||||| ||| |||||||||||||  |||| ||||||    
T  40795976 ttggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaattctacaatcgaaagct 40796047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 5489879 - 5489946
Alignment:
Q  58 taaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaat 127  Q
    ||||||||||| |  ||||||||||| ||||||||||| ||| ||||||||  |||| ||||||||||||    
T  5489879 taaaatcaattatataatcaaaagctccaatttctagcatcaagtagaatc--aattttggaggcaaaat 5489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 42816454 - 42816524
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaag 81  Q
    |||| ||||||||||||| |||||| ||| |  |||||||||||||| |||||||||||| |||| |||||    
T  42816454 tttgcatacattcatgtagaagtgaattgaattataaatttgtgtgtgaaaatcaattctagaattaaaag 42816524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 28725088 - 28725137
Alignment:
Q  61 aatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||| | |||||||||||||||| ||||||||||| ||| ||||||    
T  28725088 aatcaattatagaatcaaaagctacaaattctagcttcaagtataatcaa 28725137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 3016261 - 3016162
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaa-atcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||||||||||||||| ||  ||||||| |||||||| ||||||||| |||||||||||||||| |||||  |||| ||||||||||    
T  3016261 tttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaagttcaagtagaatcaa 3016162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 30557601 - 30557505
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatca 109  Q
    ||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||||| ||||||||| |||||| | |||||||||  ||||||||    
T  30557601 tttggatacattcatataaaagtgagttgaactataaatttgtgtg-aaaatcaattctagaatcaaaaactacaaatcctagcttcaactagaatca 30557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 1514442 - 1514346
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaat 107  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| |  ||| ||||||||||| | ||||||||| |||||||    
T  1514442 tttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaat 1514346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 10324926 - 10325038
Alignment:
Q  14 tggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaa 112  Q
    |||||||||| ||||||||||||||   |||||||||||| |||||||| |||||| | |||||||||||||||||||||| ||||| ||||| ||  ||    
T  10324926 tggatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaatttctatcttcaagtagactc--aa 10325023  T
Q  113 ttctggaggcaaaat 127  Q
    |||| ||||||||||    
T  10325024 ttctagaggcaaaat 10325038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 11049347 - 11049252
Alignment:
Q  14 tggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatc 108  Q
    |||||||||||| |||||||||| ||| || |||||||||||||| |||||||||| | |||||||||||||||| | ||||||||| ||||||||    
T  11049347 tggatacattcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatc 11049252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 48549004 - 48549097
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||| |||||||||||||||| |||||||||  || |  |||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  48549004 gatacatttatgtaaaagtgagttgaacaataaatgagt-ttaaaaatcaattctagaatcagaagctacaatttctagcttcaagtagaatcaa 48549097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 28083874 - 28083973
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||| ||||||||||||||||| || ||   |||||||||||||||| | |||| | |||||||||||||||| ||||||||||| ||||||||||    
T  28083874 tttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaatcaa 28083973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 7524212 - 7524136
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    |||||| ||||| |||||||||||||||| || |||||||||||||| ||||||||||||  |||||||||||||||    
T  7524212 tttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaa 7524136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 213523 - 213602
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaattt 90  Q
    ||||||| ||||||||||||||||||||| |||| ||||||| || | |||||||||||| ||||||||||| |||||||    
T  213523 tttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaatcaaaagccacaattt 213602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 30850393 - 30850483
Alignment:
Q  20 cattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatca 109  Q
    ||||||||||||||||||||| || |||||||||| || |||||||||||||  ||| |||| |||||| | |||| |||| |||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaatca 30850483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 3515869 - 3515820
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatc 108  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  3515869 aaaatcaattctagaatgaaaagctacaatttctagcttcaagtagaatc 3515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 6021891 - 6021785
Alignment:
Q  24 catgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggc 122  Q
    ||||||||||||||||| || ||||| ||| |||| |||||| ||| | |||||||||||||||  | ||||||||| ||||||||   ||||| |||||    
T  6021891 catgtaaaagtgagttgaaccataaacttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaatc--gattctagaggc 6021794  T
Q  123 aaaatcaat 131  Q
    |||||||||    
T  6021793 aaaatcaat 6021785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 26373535 - 26373612
Alignment:
Q  17 atacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagct 96  Q
    ||||||||||||||||||||| || |   ||||||||||  ||||||||||||| |||||||||||||||| ||| ||||    
T  26373535 atacattcatgtaaaagtgagatgaattttaaatttgtg--taaaatcaattctagaatcaaaagctacaagttcaagct 26373612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 28287337 - 28287417
Alignment:
Q  27 gtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaa 106  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||  ||||||||||||||| | || |||||| ||||||    
T  28287337 gtaaaagttagttgaacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaa 28287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 34915165 - 34915089
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagctacaa 87  Q
    |||| |||||||||||||||||||||||| |  ||||| | ||||| || |||||||||| ||||||||||||||||    
T  34915165 tttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacaa 34915089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 7790644 - 7790727
Alignment:
Q  28 taaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||| ||||||||||||||||| |||||||||| | ||||| ||| |||||| |  || ||||| ||||||||||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaa 7790727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 8382049 - 8381966
Alignment:
Q  28 taaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||| |||||||| |||  ||||||| |||||||| |||  | | ||||||||||||||||||| ||||||||||    
T  8382049 taaaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaactagaggctacaatttctagcttcaagtagaatcaa 8381966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 20026166 - 20026249
Alignment:
Q  28 taaaagtgagttgtacaataaatttgtgtgta-aaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||| ||| |||||||||||| ||||  ||||||||||| || | |||||||  |||||||||||||| ||||||||||    
T  20026166 taaaagtgaattgaacaataaatttgagtgttcaaatcaattctagagttaaaagcttgaatttctagcttcaagtagaatcaa 20026249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 47892421 - 47892472
Alignment:
Q  58 taaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatca 109  Q
    ||||||||||||| |||||||||||| ||||||||||||| | |||||||||    
T  47892421 taaaatcaattctagaatcaaaagcttcaatttctagctttaagtagaatca 47892472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 20721054 - 20721108
Alignment:
Q  154 ttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacac 208  Q
    |||||||| | |||||| ||||| |||||||||||||||||||| ||||||||||    
T  20721054 ttctacacctctagaatcaattttgattcctccaaaagtggaacaaaacatacac 20721108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 47321902 - 47321991
Alignment:
Q  21 attcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||||||| ||| || |||||||||||| | |||||||||||| |||| |||| || ||| ||||||||||| ||| ||||||    
T  47321902 attcatgtaaaagtgaattgaactataaatttgtgtatgaaaatcaattctagaattaaaa-ctgcaaattctagcttcaagtataatcaa 47321991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 4458486 - 4458405
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaat-caattctggaatcaaaagctacaatttc 91  Q
    ||||||||||||||| |||||||||| ||||||||||||||   |||| |||| ||||||| |||| |||| || |||||||    
T  4458486 atttggatacattcaggtaaaagtgaattgtacaataaattcaagtgttaaatccaattctagaataaaaaacttcaatttc 4458405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 9939719 - 9939832
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaatt 114  Q
    ||||| |||||||||| |||||||| | |||||||||| |||||||| ||||||  ||||| | |||||||||||| ||||||   ||||||||  ||||    
T  9939719 gatacgttcatgtaaa-gtgagttgaataataaatttgagtgtaaaattcaattaaggaattagaagctacaatttttagcttatagtagaatc--aatt 9939815  T
Q  115 ctggaggcaaaatcaat 131  Q
    || | ||||||||||||    
T  9939816 ctaggggcaaaatcaat 9939832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 8130911 - 8130851
Alignment:
Q  147 aaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacataca 207  Q
    |||||| |||||||| |||||||| ||||| |  ||||||| |||||||||||||||||||    
T  8130911 aaatcaattctacacttttagaatcaattttggctcctccagaagtggaaccaaacataca 8130851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 32088691 - 32088763
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacata 205  Q
    |||||||||||||||||||| || |||||||  |||||||| || || | ||||||| |||||| ||||||||    
T  32088691 aaccaaacatgtcaaaatcaattttacacgtccagaattaactttgactgctccaaacgtggaatcaaacata 32088763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 33693072 - 33693032
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  33693072 aaaatcaattatagaatcaaaagctacaatttctagcttca 33693032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 41516946 - 41516883
Alignment:
Q  141 atgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacat 204  Q
    |||||| ||||| |||||||| | ||||||  |||| || ||||||||||||||||||||||||    
T  41516946 atgtcataatcaattctacacctctagaatggattttgactcctccaaaagtggaaccaaacat 41516883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 1233400 - 1233354
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa 62  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||||||    
T  1233400 gatacattcatgtgaaagtgagttcaacaataaatttgagtgtaaaa 1233354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 8381952 - 8381882
Alignment:
Q  132 gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaac 202  Q
    ||||||||||||||||||||| || || || | |||||| ||||| || ||||||| |||| |||||||||    
T  8381952 gaaccaaacatgtcaaaatcaattttatacctctagaatcaattttgactcctccagaagtcgaaccaaac 8381882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 14105035 - 14105101
Alignment:
Q  144 tcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacacta 210  Q
    ||||||||  |||||||| | |||||| ||||| || | ||||||||||||||| ||||||||||||    
T  14105035 tcaaaatctattctacacatgtagaatcaattttgaattctccaaaagtggaactaaacatacacta 14105101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 20720901 - 20720827
Alignment:
Q  26 tgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttca 99  Q
    ||||||||||||||| |  |||||||||  ||||||| |||||||| |||||| ||| |||||||||||| ||||    
T  20720901 tgtaaaagtgagttgaaggataaatttgattgtaaaaatcaattctagaatcataagttacaatttctagattca 20720827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 40663000 - 40663061
Alignment:
Q  45 ataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaat 107  Q
    |||||||||||||| || |||||||| |||||||||||||||| | ||||||| | |||||||    
T  40663000 ataaatttgtgtgttaa-tcaattcttgaatcaaaagctacaaatactagctttaagtagaat 40663061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 52263633 - 52263683
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa 62  Q
    |||||||||||| |||||||| ||||||  |||||||||||| ||||||||    
T  52263633 tttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaa 52263683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 11817302 - 11817359
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaatt 68  Q
    ||||| ||||||| |||||||||| ||||| || ||||||||||||  ||||||||||    
T  11817302 atttgaatacattaatgtaaaagttagttgaactataaatttgtgtaaaaaatcaatt 11817359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 31362239 - 31362280
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttcag 100  Q
    |||||||||||| |||||||||||||||| ||||| ||||||    
T  31362239 aaaatcaattctagaatcaaaagctacaaattctaacttcag 31362280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 49079331 - 49079408
Alignment:
Q  132 gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    |||||||||||||||||||||  ||||||| | | ||||  |||| ||   |||||||||||||| ||||||||||||    
T  49079331 gaaccaaacatgtcaaaatcaactctacacctctggaatcgattttgagcactccaaaagtggaatcaaacatacact 49079408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 3416179 - 3416103
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    ||||||||||| ||| ||||| ||||||  || |||||||||||||| ||||||||||||  ||| |||| ||||||    
T  3416179 tttggatacatccatataaaattgagttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaactacaa 3416103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 24588001 - 24587910
Alignment:
Q  22 ttcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattct--ggaatcaaaagctacaatttct-agcttcaggtagaatca 109  Q
    ||||||||||||||||||| | |||||||||| ||| ||||||||||| |   |||||||||||| |||| ||| | ||||| |||||||||    
T  24588001 ttcatgtaaaagtgagttgaataataaatttgagtgttaaaatcaattatagagaatcaaaagctccaatatctaaacttcaagtagaatca 24587910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 27500374 - 27500334
Alignment:
Q  22 ttcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa 62  Q
    ||||||||||| ||||||| |||||||||||| ||||||||    
T  27500374 ttcatgtaaaaatgagttgaacaataaatttgagtgtaaaa 27500334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 47053504 - 47053476
Alignment:
Q  11 atttggatacattcatgtaaaagtgagtt 39  Q
    |||||||||||||||||||||||||||||    
T  47053504 atttggatacattcatgtaaaagtgagtt 47053476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 7717320 - 7717425
Alignment:
Q  18 tacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctg 117  Q
    |||||||||||| |||||||||| |||||||||||| |||||||      ||  |||||| ||||||||||||||||||||| ||||||||  |||||||    
T  7717320 tacattcatgtagaagtgagttgaacaataaatttgagtgtaaa------tcgagaatcagaagctacaatttctagcttcaagtagaatc--aattctg 7717411  T
Q  118 gaggcaaaatcaat 131  Q
    ||||||||||||||    
T  7717412 gaggcaaaatcaat 7717425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 52925729 - 52925814
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacactaaataatat 218  Q
    |||||||||||||||||||| || ||||| | |||||| ||||| || |||||||||||||||||| |||||||||||||| ||||    
T  52925729 aaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaaccgaacatacactaaattatat 52925814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 31708225 - 31708301
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagctacaa 87  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||| || |||||||||| ||||||||||||||||    
T  31708225 tttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaa 31708301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 36302280 - 36302164
Alignment:
Q  14 tggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaa 112  Q
    ||||| ||||||||||||||||||||| |||||||||||  ||| |||||||||||||  |||||||| || |||| ||||||||||  |||||||  ||    
T  36302280 tggattcattcatgtaaaagtgagttgaacaataaatttaagtgctaaaatcaattctaaaatcaaaatctccaatctctagcttcaaatagaatc--aa 36302183  T
Q  113 ttctggaggcaaaatcaat 131  Q
     |||| |||||||||||||    
T  36302182 ctctgaaggcaaaatcaat 36302164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 27266790 - 27266876
Alignment:
Q  22 ttcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaat 107  Q
    ||||||||||||| ||||| |||||||||||| |||| ||||| |||||| ||||||  |||||||||||||||||||| |||||||    
T  27266790 ttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaatcattagctacaatttctagcttcaagtagaat 27266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 35058445 - 35058342
Alignment:
Q  28 taaaagtgagttgtacaataa-atttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaa 125  Q
    ||||||||||||| ||||||| ||||| |||| |||||||||||| ||||||||||||  ||||||||||| || ||||||||  |||||| ||||||||    
T  35058445 taaaagtgagttgaacaataatatttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagtagaatc--aattcttgaggcaaa 35058348  T
Q  126 atcaat 131  Q
    ||||||    
T  35058347 atcaat 35058342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 35264397 - 35264495
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatca 109  Q
    ||||| ||||||||||||||| ||| ||| |||||||||||  |||| |||||||||||| ||||||||||||  ||||||||| |||| |||||||||    
T  35264397 tttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaatcaaaagctctaatttctagtttcaagtagaatca 35264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 25359560 - 25359678
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||| || |||||| ||  ||||||||| ||||||| |||||||||| | |||| |||| |||||| ||||| ||||| ||||||||      
T  25359560 tttggatacattcatatagaagtgattttaacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaacttcaagtagaatc-- 25359657  T
Q  111 aattctggaggcaaaatcaat 131  Q
    ||||||||||||| |||||||    
T  25359658 aattctggaggcagaatcaat 25359678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 39256639 - 39256566
Alignment:
Q  136 caaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    ||||||||||||||||| |||||||| | ||||| |||||| |||| ||||||||||||||||||||| |||||    
T  39256639 caaacatgtcaaaatcaattctacacctctagaactaattttgatttctccaaaagtggaaccaaacacacact 39256566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 3776620 - 3776524
Alignment:
Q  13 ttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatc 108  Q
    ||||||||||| |||||||||||||||   ||| ||||||| |||||||| | |||||| |||||| |||||||||||||||| |||| ||||||||    
T  3776620 ttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaattaattctagaatcagaagctacaatttctagattcaagtagaatc 3776524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 3845233 - 3845305
Alignment:
Q  136 caaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacac 208  Q
    ||||||||||||||||| |||||||| | |||||| ||||| | || ||||||||||||||||||||||||||    
T  3845233 caaacatgtcaaaatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaacatacac 3845305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 5407003 - 5406887
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaa 111  Q
    ||||||||||||||||||||||||| ||| | | ||||||||| |  ||||||||||||  ||||| ||||||| ||||||||||||  ||||||||       
T  5407003 tttggatacattcatgtaaaagtgatttgaagagtaaatttgt-ttaaaaatcaattctataatcagaagctaccatttctagcttcgagtagaatc--c 5406907  T
Q  112 attctggaggcaaaatcaat 131  Q
    ||||| ||||||||||||||    
T  5406906 attctagaggcaaaatcaat 5406887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 1441499 - 1441574
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacac 208  Q
    |||||||||||||||| ||| |||||||| | ||||| |||||| | || ||||||||||||||||||||||||||    
T  1441499 aaccaaacatgtcaaactcaattctacacctctagaaataattttggttactccaaaagtggaaccaaacatacac 1441574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 46853523 - 46853592
Alignment:
Q  15 ggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagct 83  Q
    ||||| ||| |||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||    
T  46853523 ggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 46853592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 37335025 - 37335138
Alignment:
Q  17 atacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattc 115  Q
    |||||||||| ||||| ||||||| ||||| ||||   |||||||| |||||||| |||||||||||||| ||||||| ||||  ||| ||||  |||||    
T  37335025 atacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaagctacgatttctaacttctagtaaaatc--aattc 37335122  T
Q  116 tggaggcaaaatcaat 131  Q
    | ||||||||||||||    
T  37335123 tcgaggcaaaatcaat 37335138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 40147836 - 40147935
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgta-aaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||| |||||||||||||||| |  |||||||   ||||  ||||||||||| |||||||||||| ||| ||||||||| | ||||||||||    
T  40147836 tttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatcaa 40147935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 3776507 - 3776430
Alignment:
Q  132 gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    ||||||||||||||||||||| |||||||| | || ||  ||||| |  ||||||||||||||||||||| |||||||    
T  3776507 gaaccaaacatgtcaaaatcaattctacacctctataaccaattttgtctcctccaaaagtggaaccaaatatacact 3776430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 35253452 - 35253541
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    ||||||| ||| |||||||||||||||||| |  ||||||||| |||| |||||||||||| ||| || ||||||| ||||| |||||||    
T  35253452 atttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaattctagaaccagaagctactatttccagcttca 35253541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 41596135 - 41596211
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    |||||||||||||||| ||||||||||   || ||||| |||||||| ||||||||||||  |||||||||||||||    
T  41596135 tttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaattctttaatcaaaagctacaa 41596211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 51285518 - 51285450
Alignment:
Q  141 atgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    |||||||||||| |||||||| | |||||||||||| |  | ||| |||||||||||||||||||||||    
T  51285518 atgtcaaaatcaattctacacctctagaattaatttcggctactcaaaaagtggaaccaaacatacact 51285450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 44958622 - 44958710
Alignment:
Q  42 acaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaatcaat 131  Q
    |||||||| ||| |||| ||||||| |||| |||||||||||| ||||||||||| ||  ||||||||  || ||||||||||||||||||    
T  44958622 acaataaagttgagtgttaaaatcatttctagaatcaaaagctccaatttctagcatcgagtagaatc--aactctggaggcaaaatcaat 44958710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 31492832 - 31492790
Alignment:
Q  45 ataaatttgtgtgtaaaatcaattctggaatcaaaagctacaa 87  Q
    |||||||||||||| ||||||||||| ||||||||||||||||    
T  31492832 ataaatttgtgtgttaaatcaattctagaatcaaaagctacaa 31492790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 30300997 - 30301103
Alignment:
Q  25 atgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaa-tcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggc 122  Q
    ||||||||||| |||| |||||||||||| ||| ||||| ||||||| ||| | |||| || |||||||||||||||  |||| ||  |||| |||||||    
T  30300997 atgtaaaagtgggttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttcaaatagagtc--aattttggaggc 30301094  T
Q  123 aaaatcaat 131  Q
    |||||||||    
T  30301095 aaaatcaat 30301103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 44771745 - 44771675
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggaggcaaaatcaat 131  Q
    |||||||||| | |||||||||||||||| |||||| || ||||||||||  ||||| |||||||||| ||||    
T  44771745 aaaatcaattttagaatcaaaagctacaaattctagatttaggtagaatc--aattccggaggcaaaaccaat 44771675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 48089819 - 48089887
Alignment:
Q  137 aaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacata 205  Q
    ||||||||| |||||||||||| || | |||||| ||||| || ||||||||||||| || ||||||||    
T  48089819 aaacatgtctaaatcagttctatacctctagaataaattttgactcctccaaaagtgaaaacaaacata 48089887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 584779 - 584877
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||||||||||| ||||||||||||| |  ||||| ||||||  ||  |||||||||||  ||||  ||||||||||||||||||| || ||||||||||    
T  584779 tttggatacatttatgtaaaagtgagctaaacaattaatttgactgcaaaaatcaattcaagaatttaaagctacaatttctagctgca-gtagaatcaa 584877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 34867309 - 34867380
Alignment:
Q  138 aacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacact 209  Q
    ||||||||||||||| |||||||| | |||||| ||||| |  | ||  |||||||||||||||||||||||    
T  34867309 aacatgtcaaaatcaattctacacctgtagaatcaatttcggcttctgtaaaagtggaaccaaacatacact 34867380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 38332540 - 38332627
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaa-atcaattctggaatcaaaagctacaatttctagcttc 98  Q
    |||| ||||||||||| | || ||||||| |||||||||||| ||||||| | ||||| | |||||| ||||| |||||| |||||||    
T  38332540 tttgtatacattcatggataaatgagttgaacaataaatttgagtgtaaataccaattttagaatcagaagctccaatttgtagcttc 38332627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 51285668 - 51285597
Alignment:
Q  13 ttggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagct 83  Q
    ||||||||||||||||||||| | |||  |||| ||||||| |||  |||||||||||| ||||||||||||    
T  51285668 ttggatacattcatgtaaaagcgggttaaacaacaaatttgagtgcaaaaatcaattctagaatcaaaagct 51285597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 32523336 - 32523402
Alignment:
Q  22 ttcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    |||||||| |||||||||  ||  ||||||||||||| |||||||||| | ||||||||||||||||    
T  32523336 ttcatgtataagtgagttaaactctaaatttgtgtgtaaaaatcaattttagaatcaaaagctacaa 32523402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 43661933 - 43661883
Alignment:
Q  17 atacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaa 66  Q
    |||||||||||||||||||||||| |||||| |||| ||||| ||||||||    
T  43661933 atacattcatgtaaaagtgagttgaacaatacatttatgtgtgaaaatcaa 43661883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 190924 - 190875
Alignment:
Q  13 ttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa 62  Q
    ||||||||||||| || ||||||||||| |||||||||||| ||| ||||    
T  190924 ttggatacattcacgtgaaagtgagttgaacaataaatttgagtgcaaaa 190875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 829855 - 829786
Alignment:
Q  135 ccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacat 204  Q
    ||||| |||||||||||| || ||||| | |||||| ||||| | ||| ||||||||||||||| |||||    
T  829855 ccaaatatgtcaaaatcacttttacacatgtagaatgaattttggttcatccaaaagtggaacctaacat 829786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 1290748 - 1290675
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatac 206  Q
    |||||||||  ||||||||| |||||||| | |||||| |||||   |||||| | ||||||||||||||||||    
T  1290748 aaccaaacaaatcaaaatcaattctacacctctagaatcaattttagttcctctagaagtggaaccaaacatac 1290675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 4526224 - 4526155
Alignment:
Q  19 acattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    ||||| ||||||||||| |||| || |||||||||||||| |||||||||| |  ||||||||| |||||    
T  4526224 acatttatgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaattttaaaatcaaaagttacaa 4526155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 52141239 - 52141320
Alignment:
Q  17 atacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagctt 97  Q
    |||||||||| ||||||||||||| || |||| | ||||||| ||||| |||||| ||||| || ||||||| | |||||||    
T  52141239 atacattcatataaaagtgagttgaactataattatgtgtgtgaaaattaattctagaatcgaatgctacaaatcctagctt 52141320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 584909 - 584985
Alignment:
Q  132 gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacac 208  Q
    |||| |||||| |||||||||  ||| ||| | |||||| ||||| | || |||||||||||| |||||||||||||    
T  584909 gaacaaaacatatcaaaatcaactctgcacctctagaatcaattttggttactccaaaagtgggaccaaacatacac 584985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 7262909 - 7262873
Alignment:
Q  16 gatacattcatgtaaaagtgagttgtacaataaattt 52  Q
    ||||||||||||||||||||||||| || ||||||||    
T  7262909 gatacattcatgtaaaagtgagttggacgataaattt 7262873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 31013117 - 31013041
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattctggaatcaaaagctacaa 87  Q
    ||||||| |||||||||| |||||||||| |   |||||||||||| || |||||||||| || ||||| |||||||    
T  31013117 tttggatgcattcatgtacaagtgagttgaattctaaatttgtgtgttagaatcaattctagattcaaaggctacaa 31013041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 9818826 - 9818717
Alignment:
Q  20 cattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa--tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctg 117  Q
    ||||||| ||||||||||||| || |||||||||||| |||||  |||||||| |||||||||||||||| |  |||||||| ||||||||  |||| ||    
T  9818826 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc--aattatg 9818729  T
Q  118 gaggcaaaatca 129  Q
    ||||||||||||    
T  9818728 gaggcaaaatca 9818717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 6951290 - 6951390
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgta-aaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatca 109  Q
    ||||||||| |||||||||||||||| ||| |  |||||||| |||||| ||||||||| | |||||||||||||||| | ||| ||||| |||||||||    
T  6951290 atttggataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatca 6951389  T
Q  110 a 110  Q
    |    
T  6951390 a 6951390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 34250340 - 34250540
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaaa 111  Q
    |||||| ||||||||  |||||| ||||| |||| ||||||||||| |||| ||||| | |||||||||||||||||||||||| ||| ||||||||||     
T  34250340 tttggaaacattcata-aaaagtaagttgaacaaaaaatttgtgtgaaaaa-caattgtagaatcaaaagctacaatttctagcatcaagtagaatcaa- 34250436  T
Q  112 attctggaggcaaaatcaatg------------aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaacca 199  Q
     |||| |||||| |||||||             ||||||||||||||||| || |||||||| | |||||| ||||   | |||| ||||||||||||||    
T  34250437 -ttctagaggcataatcaattctactctagagaaaccaaacatgtcaaaaacaattctacacatctagaatcaattataactccttcaaaagtggaacca 34250535  T
Q  200 aacat 204  Q
    |||||    
T  34250536 aacat 34250540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 18851068 - 18851167
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||  ||||||||||||||||||  || |||||| ||||||| ||||||||||||  ||||||||||||||| |  |||||||| ||||||||||    
T  18851068 tttggataacttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaa 18851167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 36640026 - 36639918
Alignment:
Q  22 ttcatgtaaaagtgagttgtacaataaatttgtgtgtaaaat-caattctggaatcaaaagctacaatttctagcttcaggtagaatcaaaattctggag 120  Q
    |||||||||||||||| || ||| |||||||| ||||||||  ||||||| |||| | ||||||||||||| ||||||| ||||||||   ||| |||||    
T  36640026 ttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaattagaagctacaatttccagcttcaagtagaatc--tattttggag 36639929  T
Q  121 gcaaaatcaat 131  Q
    |||||||||||    
T  36639928 gcaaaatcaat 36639918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 3043126 - 3043196
Alignment:
Q  137 aaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacataca 207  Q
    |||||||||||||||| |||||||| | |||||| ||||| |||||||||| ||||||||||| |||||||    
T  3043126 aaacatgtcaaaatcaattctacacctctagaatcaattttgattcctccataagtggaaccagacataca 3043196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 38845543 - 38845443
Alignment:
Q  12 tttggatacattcatgtaaaa-gtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatca 109  Q
    |||||||| |||||||||||| |||||||  || ||| |||||||||| |||||||||||| ||||||||| |||||| |  |||||||| |||||||||    
T  38845543 tttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagtagaatca 38845444  T
Q  110 a 110  Q
    |    
T  38845443 a 38845443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 15368211 - 15368136
Alignment:
Q  132 gaaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacataca 207  Q
    |||||| |||||||||||||| |||||||  | |||||| ||||| |  |||||||||||||||||||||||||||    
T  15368211 gaaccatacatgtcaaaatcaattctacatatctagaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 29922861 - 29922782
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacactaaa 212  Q
    |||||||||||||||||||| ||||||||   |||||| ||||| || ||||| ||||||||||  ||||||||||||||    
T  29922861 aaccaaacatgtcaaaatcaattctacactactagaatcaattttgactcctcaaaaagtggaagtaaacatacactaaa 29922782  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 42858207 - 42858108
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    |||| ||| |||||||||||||||||||| || |||||||||||||| |||||||||| | |||| ||||||| ||| | ||| ||||| ||| ||||||    
T  42858207 tttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaa 42858108  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 10898810 - 10898770
Alignment:
Q  22 ttcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa 62  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  10898810 ttcatgtaaaagtgagttgaacaataaatttgtgtgtaaaa 10898770  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 3970434 - 3970505
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttcag-gtagaatcaaaattctggaggcaaaatcaat 131  Q
    |||||||| | |||| ||||||||||||||| ||||||||||  |||||||  |||||||||||||||||||||    
T  3970434 aaaatcaagtttggagtcaaaagctacaattcctagcttcagattagaatc--aattctggaggcaaaatcaat 3970505  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 22226227 - 22226321
Alignment:
Q  17 atacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||| |||||||||| ||| | ||  ||||||||||||||||| | ||||||  ||||||||||||||| | ||| ||||| ||||||||||    
T  22226227 atacattaatgtaaaagttagtcgaactctaaatttgtgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaatcaa 22226321  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 10859942 - 10860013
Alignment:
Q  136 caaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacataca 207  Q
    |||||| |||||||||| |||||||| | || ||| ||||| |  || ||||||||||||||||||||||||    
T  10859942 caaacaggtcaaaatcatttctacacctctataatgaattttgcctcttccaaaagtggaaccaaacataca 10860013  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 15368572 - 15368489
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaa-atcaattctggaatcaaaagctacaatttctag 94  Q
    |||| |||||| ||||||||||||| ||| |||| | ||||| ||||||| ||||||| | |||||| ||||||||| ||||||    
T  15368572 tttgaatacatccatgtaaaagtgacttgaacaacatatttgagtgtaaagatcaattatagaatcagaagctacaacttctag 15368489  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 24306112 - 24306170
Alignment:
Q  42 acaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||||||||| |||||||| |||||| | |||||||||| ||||||||||| |||||    
T  24306112 acaataaatttgagtgtaaaaatcaattatagaatcaaaagttacaatttctaacttca 24306170  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 24367204 - 24367146
Alignment:
Q  42 acaataaatttgtgtgtaaaa-tcaattctggaatcaaaagctacaatttctagcttca 99  Q
    |||||||||||| |||||||| |||||| | |||||||||| ||||||||||| |||||    
T  24367204 acaataaatttgagtgtaaaaatcaattatagaatcaaaagttacaatttctaacttca 24367146  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 28973823 - 28973753
Alignment:
Q  135 ccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacata 205  Q
    |||||||| ||||||||| |||||||| | |||||| ||||| |  |||||||||| | ||||||||||||    
T  28973823 ccaaacatatcaaaatcaattctacacatctagaatcaatttaggctcctccaaaactagaaccaaacata 28973753  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 4306611 - 4306558
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgtaaaatca 65  Q
    |||||||||||||||||||||  || ||| |||||||||||  |||||||||||    
T  4306611 tttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaatca 4306558  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 28110431 - 28110500
Alignment:
Q  19 acattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaa 87  Q
    ||||| || ||||||||||||  || |||||||||||||| ||||||||||||  ||||||||| |||||    
T  28110431 acatttatataaaagtgagttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagttacaa 28110500  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 8591581 - 8591521
Alignment:
Q  11 atttggatacattcatgtaaaagtgagttgtacaataaatttgtgtg-taaaatcaattct 70  Q
    |||||||||||||| | ||||||||||||| |||| ||||||| |||  ||||||||||||    
T  8591581 atttggatacattcctataaaagtgagttgaacaacaaatttgagtgaaaaaatcaattct 8591521  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 10898689 - 10898629
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtg 193  Q
    |||||||||||||||||| | ||| |||  | |||||| ||||| ||||||||||||||||    
T  10898689 aaccaaacatgtcaaaattaattcgacagctctagaatcaattttgattcctccaaaagtg 10898629  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 37019604 - 37019644
Alignment:
Q  136 caaacatgtcaaaatcagttctacacgtttagaattaattt 176  Q
    ||||||||||||||||| || |||||||||| |||||||||    
T  37019604 caaacatgtcaaaatcaattttacacgtttataattaattt 37019644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 39097231 - 39097159
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacata 205  Q
    |||||||||||||||||||| |||||||| | || ||| ||||| | |  ||| ||||||| |||||||||||    
T  39097231 aaccaaacatgtcaaaatcaattctacacctctataatcaatttcggtctctctaaaagtgaaaccaaacata 39097159  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 43310574 - 43310614
Alignment:
Q  59 aaaatcaattctggaatcaaaagctacaatttctagcttca 99  Q
    ||||||||||||  ||||||||||||||||||||| |||||    
T  43310574 aaaatcaattctataatcaaaagctacaatttctatcttca 43310614  T

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Target: scaffold0361 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 14100 - 14198
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgtacaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaatcaa 110  Q
    ||||||||||||||||| ||||||||||| | |||||||||| |||| |||||||||||| |||||| ||||||  ||| ||||||||| ||||||||||    
T  14100 tttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaatcataagcta-gattgctagcttcaagtagaatcaa 14198  T

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Target: scaffold0361; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 14242 - 14309
Alignment:
Q  144 tcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacactaa 211  Q
    ||||||||| |||||||| | |||| | ||||| |  || ||||||||||||||||||||||||||||    
T  14242 tcaaaatcaattctacacatctagattcaattttggctcttccaaaagtggaaccaaacatacactaa 14309  T

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Target: scaffold0168 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 31928 - 31807
Alignment:
Q  12 tttggatacattcatgtaaaagtgagttgt---acaataaatttgtgtgt-aaaatcaattctggaatcaaaagctacaatttctagcttcaggtagaat 107  Q
    |||||||||||| |||||||||||||||||   || |||||| ||| ||| |||||||||||   ||||||||||||||| | ||||||||| ||| |||    
T  31928 tttggatacatttatgtaaaagtgagttgtttaactataaatatgtatgtgaaaatcaattcaataatcaaaagctacaaatcctagcttcaagtataat 31829  T
Q  108 caaaattctggaggcaaaatcaat 131  Q
    |  |||| |||||||| |||||||    
T  31828 c--aattttggaggcagaatcaat 31807  T

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Target: scaffold0168; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 31793 - 31718
Alignment:
Q  133 aaccaaacatgtcaaaatcagttctacacgtttagaattaatttggattcctccaaaagtggaaccaaacatacac 208  Q
    |||||||||||||| ||||| |||||||| | |||||| ||||| | |  ||| | ||||||||||||||||||||    
T  31793 aaccaaacatgtcagaatcaattctacacctctagaatcaattttggtcactctagaagtggaaccaaacatacac 31718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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