View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_low_25 (Length: 241)
Name: NF3226_1D_low_25
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 3778178 - 3778393
Alignment:
| Q |
6 |
gtttggtgtttgattctccaaccatttcaaacaatctgatccatttgactcatcaatactttttgaaccattttgtatgattggtccaaccaaatagact |
105 |
Q |
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| T |
3778178 |
gtttggtgtttgattctccaaccatttcaaacaatctgatccatttgactcatcaatactttttgaaccattttgtatgattggtccaaccaaatagact |
3778277 |
T |
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| Q |
106 |
aattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagt |
205 |
Q |
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| T |
3778278 |
aattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagt |
3778377 |
T |
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| Q |
206 |
tcttggaatgtagaag |
221 |
Q |
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|||||||||||||||| |
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| T |
3778378 |
tcttggaatgtagaag |
3778393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 3707680 - 3707463
Alignment:
| Q |
4 |
gagtttggtgtttgattctccaaccatttcaaacaatctgatccatttgactcatcaatactttttgaaccattttgtatgattggtccaaccaaataga |
103 |
Q |
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| T |
3707680 |
gagtttggtgtttgattctccaaccacttcaaacagattgacccatttgactcttcactacaatttgaaccactttgtatgattggtccaaccatataaa |
3707581 |
T |
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| Q |
104 |
ctaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaa |
203 |
Q |
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| T |
3707580 |
ctaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcgccaagaaaccatgagcaagagacaa |
3707481 |
T |
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| Q |
204 |
gttcttggaatgtagaag |
221 |
Q |
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| T |
3707480 |
gttcttggaatgtagaag |
3707463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 3770515 - 3770732
Alignment:
| Q |
4 |
gagtttggtgtttgattctccaaccatttcaaacaatctgatccatttgactcatcaatactttttgaaccattttgtatgattggtccaaccaaataga |
103 |
Q |
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| T |
3770515 |
gagtttggtgtttgattctccaaccacttcaaacagattgacccatttgactcttcacttcaatttgaaccactttgtatgattggtccaaccatataaa |
3770614 |
T |
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| Q |
104 |
ctaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaa |
203 |
Q |
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| T |
3770615 |
ctaatttggtggttttgttgtgctcctcctgcaaggctctccctgtactagcctccatttttgagaaactattcaccaagaaaccatgagcaagagacaa |
3770714 |
T |
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| Q |
204 |
gttcttggaatgtagaag |
221 |
Q |
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| T |
3770715 |
gttcttggaatgtagaag |
3770732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 3719189 - 3718972
Alignment:
| Q |
4 |
gagtttggtgtttgattctccaaccatttcaaacaatctgatccatttgactcatcaatactttttgaaccattttgtatgattggtccaaccaaataga |
103 |
Q |
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| T |
3719189 |
gagtttggtgtttgattctccaaccacttcaaacagatggacccatttgactcttcactacaatttgaaccactttgtatgattggtccaaccatataaa |
3719090 |
T |
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| Q |
104 |
ctaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaa |
203 |
Q |
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| T |
3719089 |
ctaatttggtggttttgttgagctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagacga |
3718990 |
T |
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| Q |
204 |
gttcttggaatgtagaag |
221 |
Q |
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| T |
3718989 |
gtttttgcaatgttgaag |
3718972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 3700913 - 3700820
Alignment:
| Q |
4 |
gagtttggtgtttgattctccaaccatttcaaacaatctgatccatttgactcatcaatactttttgaaccattttgtatgattggtccaacca |
97 |
Q |
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|||||||||||||||||||||||||| |||||||| || |||||||||||||| |||| | ||||||| ||||||||||||| ||||||| |
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| T |
3700913 |
gagtttggtgtttgattctccaaccacttcaaacagatggactcatttgactcatcactactatctgaaccagtttgtatgattggcccaacca |
3700820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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