View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_low_27 (Length: 238)
Name: NF3226_1D_low_27
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 23776586 - 23776787
Alignment:
| Q |
14 |
gaacaggaaatcggtgaggtggagagcaaacttgtgaaaacggtagcgacagaaataatgcgattgaagacttggaggttaaccgattggaaaaaattga |
113 |
Q |
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| T |
23776586 |
gaacaggaaaccggtgaggtggagagcaaacttgtgaaaacgacaacaacataaataatgcgattgaagacttggaggttaaccgattggaagaaattga |
23776685 |
T |
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| Q |
114 |
gaaaacaatcgatgtgaagaaacagtacggtggtaaagtatcagaccctgtgattacgttgttggcttaaatcatccaccatcatcaggagaaaaacaag |
213 |
Q |
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| T |
23776686 |
gaaaacaagcgatgtgaagaaacaatacggcggtaaagtatcagaccctgtgattacgttgttggcttaaataat---ccatcatcaggagaaaaacaag |
23776782 |
T |
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| Q |
214 |
aaaag |
218 |
Q |
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||||| |
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| T |
23776783 |
aaaag |
23776787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 32298418 - 32298335
Alignment:
| Q |
109 |
attgagaaaacaatcgatgtgaagaaa-cagtacggtggtaaagtatcagaccctgtgattacgttgttggcttaaatcatcca |
191 |
Q |
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| T |
32298418 |
attgacaaaacaagcgatgtgaaaaaaacaatacggcggtaaagtatcagaccatgtgattacgttgttggcttaaatcatcca |
32298335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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