View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_low_28 (Length: 227)
Name: NF3226_1D_low_28
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 31768940 - 31769138
Alignment:
| Q |
23 |
ctcacttgtgataacaagtaagtaatatcacgagcttctccttacaaatagcaacaccgataatataagaatttcaaactattttcaaaaataagtttgt |
122 |
Q |
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| T |
31768940 |
ctcacttgtgataacaagt----aatatcacgagtttctacttacaaatagaaacaccgataatataagaatttcaaactattttcaaaaataagtttgt |
31769035 |
T |
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| Q |
123 |
cttagatcaaatgaaacacttgcataagagtcacttaattttattttattttcagaagaggctttaaaagatattattaatatgtttagaaagctttaaa |
222 |
Q |
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| T |
31769036 |
cttagatcaaatgaaacacttgcataagagtcacttaattttattttattttcagaagaagctttaaaagatattattaatatgtttagaaagctttaaa |
31769135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 31769140 - 31769189
Alignment:
| Q |
166 |
ttttattttcagaagaggctttaaaagatattattaatatgtttagaaag |
215 |
Q |
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|||| |||| |||||| ||||| |||||||||||||||| |||||||||| |
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| T |
31769140 |
ttttttttttagaagaagctttgaaagatattattaataagtttagaaag |
31769189 |
T |
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