View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_low_33 (Length: 204)
Name: NF3226_1D_low_33
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 44069767 - 44069962
Alignment:
| Q |
3 |
tatcatagaaggaagaagaagaatctagggttgatagtttatttgtggtggttccgatataatggttgcacacatgagggtatggagtttgattgcatga |
102 |
Q |
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| T |
44069767 |
tatcatggaaggaagaagaagaatctagggttgatagtttatttgtggtggttccaatataatggttgcacacatgagggtatggagtttgattgcatga |
44069866 |
T |
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| Q |
103 |
caattctttgccatgcacaaacaagagacagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttatacatgtatgcaatagtgtgcat |
198 |
Q |
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| T |
44069867 |
caattctttgccatgcacaaacaagagagagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttatacatgtatgcaatagtgtgcat |
44069962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 44085338 - 44085143
Alignment:
| Q |
3 |
tatcatagaaggaagaagaagaatctagggttgatagtttatttgtggtggttccgatataatggttgcacacatgagggtatggagtttgattgcatga |
102 |
Q |
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| T |
44085338 |
tatcatggaaggaagaagaagaatctagggttgatagtttatttgtggtggttccaatataatggttgcacacatgagggtatggagtttgattgcatga |
44085239 |
T |
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| Q |
103 |
caattctttgccatgcacaaacaagagacagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttatacatgtatgcaatagtgtgcat |
198 |
Q |
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| T |
44085238 |
caattctttgccatgcacaaacaagagagagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttatacatgtatgcaatagtgtgcat |
44085143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 44095016 - 44095189
Alignment:
| Q |
3 |
tatcatagaaggaagaagaagaatctagggttgatagtttatttgtggtggttccgatataatggttgcacacatgagggtatggagtttgattgcatga |
102 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44095016 |
tatcatggaaggaagaagaagaatctagggttgatagtttatttgtggtggttccaatataatggttgcacacatgagggtatggagtttgattgcatga |
44095115 |
T |
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| Q |
103 |
caattctttgccatgcacaaacaagagacagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttat |
176 |
Q |
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| T |
44095116 |
caattctttgccatgcacaaacaagagagagaaaagaagaaagtatgcaatgcaagagttgaatatgagtttat |
44095189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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