View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_low_4 (Length: 471)
Name: NF3226_1D_low_4
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 24 - 465
Target Start/End: Complemental strand, 35771796 - 35771355
Alignment:
| Q |
24 |
gtagtaaggtcagtgacaagagaaatgcagttaatagcactaaacaatcgcagtgacggtggaaagtcagacacagatacggacacgagtttcttgcagt |
123 |
Q |
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| T |
35771796 |
gtagtaaggtcagtgacaagagaaatgcagttaatagcactaaacaatcgcagtgacggtggaaagtcagacacagatacggacacgagtttcttgcagt |
35771697 |
T |
|
| Q |
124 |
agtctaaccttagttctttgaggttgttgagattttttatgtttggtatcaaactctcaacattgcttccacttagccttaagcgttgcaacgatgataa |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35771696 |
agtctaaccttagttctttgaggttgttgagattttttatgtttggtgtcaaactctcaacattgcttccacttagccttaagcgttgcaacgatgataa |
35771597 |
T |
|
| Q |
224 |
taaaccaatgttgtcaggtagtgcctctaagttgcaacagttttccaaattcagcgaggttaaagttgattgccatgctttgatgttgaaatagagattt |
323 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35771596 |
taaaccaatgttgtcaggtagtgcctttaagttgcaacagttttccaaattcagcgaggttaaagttgattgccatgctttgatgttgaaatagagattt |
35771497 |
T |
|
| Q |
324 |
gatgcattgagttgtttgcacccagaaaggaccagagtattaagagatccaatttctatatagttttcaatattgtccccaaaacctagaagattgtcac |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35771496 |
gatgcattgagttgtttgcacccagaaaggaccagagtattaagagatccaatttctatatagttttcaatattgtccccaaaacctagaagattgtcac |
35771397 |
T |
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| Q |
424 |
aattgtgtagatcaatcatcttcagtttctggcaacaccaaa |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
35771396 |
aattgtgtagatcaatcatcttcagtttctggcaacaccaaa |
35771355 |
T |
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