View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226_1D_low_6 (Length: 431)

Name: NF3226_1D_low_6
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226_1D_low_6
NF3226_1D_low_6
[»] chr3 (2 HSPs)
chr3 (41-316)||(31769532-31769807)
chr3 (325-418)||(31769453-31769546)
[»] scaffold0246 (1 HSPs)
scaffold0246 (62-289)||(22123-22351)
[»] chr4 (5 HSPs)
chr4 (62-289)||(40484184-40484412)
chr4 (206-289)||(9690589-9690672)
chr4 (89-132)||(19120126-19120169)
chr4 (80-135)||(41879085-41879140)
chr4 (80-132)||(42272978-42273030)
[»] chr6 (3 HSPs)
chr6 (80-289)||(31706771-31706981)
chr6 (212-262)||(32185855-32185905)
chr6 (88-132)||(14844185-14844229)
[»] chr5 (3 HSPs)
chr5 (83-289)||(42259323-42259529)
chr5 (178-289)||(40167258-40167369)
chr5 (88-132)||(476261-476305)
[»] scaffold0555 (1 HSPs)
scaffold0555 (88-135)||(7716-7763)
[»] chr2 (2 HSPs)
chr2 (100-135)||(18634962-18634997)
chr2 (89-135)||(11579585-11579631)
[»] chr1 (2 HSPs)
chr1 (89-135)||(28357940-28357986)
chr1 (88-132)||(3545149-3545193)
[»] chr8 (1 HSPs)
chr8 (100-132)||(42579494-42579526)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 41 - 316
Target Start/End: Complemental strand, 31769807 - 31769532
Alignment:
Q  41 gtcgcgcctatggaggttacgtctggtcggcaacctctcttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagtt 140  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31769807 gtcgcgcctatggaggttacgtctggtcggcaacctgtcttcagcaaacgccaagctacaatggacaccttcataggaaactgcttatgccaaactagtt 31769708  T
Q  141 ctctagttgcatctattgttgaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacct 240  Q
    |||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||    
T  31769707 ctctagttgcatctattgttgaggaaatcggagctgtcagaatctgataagtgcctcgcacagtgtaaccatcatgaatatctggatcccattaccgcct 31769608  T
Q  241 gtcaataatattagcctgcacaggaacatcatcaagtaattgcctacacactccaaaaaagatttgaattgtgtat 316  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31769607 gtcaataatattagcctgcacagaaacatcatcaagtaattgcctacacactccaaaaaagatttgaattgtgtat 31769532  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 31769546 - 31769453
Alignment:
Q  325 atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggac 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31769546 atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggac 31769453  T

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Target: scaffold0246 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 22123 - 22351
Alignment:
Q  62 tctggtcggcaacctctctt-cagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttgcatctattgtt 160  Q
    ||||||||| ||||| |||| ||||||||| |||||||||||  ||||||| | |||| ||||||||||||| || || ||||| ||||| ||  ||||     
T  22123 tctggtcggtaacctgtctttcagcagacgtcaagctacaataaacaccttgagaggagcctgcttatgccatacaaggtctcttgttgcttcagttgtg 22222  T
Q  161 gaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgca 260  Q
    || || ||   || ||||||||||||||| |   |||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  22223 gaagagacctgagttgtcagaatctgatatgcacctcggacagtgtaaccttcatgaatatctggatcccactgccacctgtcaataatattagcctgca 22322  T
Q  261 caggaacatcatcaagtaattgcctacac 289  Q
    ||  |||| ||||||||||||||||||||    
T  22323 caataacaccatcaagtaattgcctacac 22351  T

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Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 40484184 - 40484412
Alignment:
Q  62 tctggtcggcaacctctctt-cagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttgcatctattgtt 160  Q
    ||||||||| ||||| |||| ||||||||| |||||||||||  ||||||| | |||| ||||||||||||| || || ||||| ||||| ||  ||||     
T  40484184 tctggtcggtaacctgtctttcagcagacgtcaagctacaataaacaccttgagaggagcctgcttatgccatacaaggtctcttgttgcttcagttgtg 40484283  T
Q  161 gaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgca 260  Q
    || || ||   || ||||||||||||||| |   |||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  40484284 gaagagacctgagttgtcagaatctgatatgcacctcggacagtgtaaccttcatgaatatctggatcccactgccacctgtcaataatattagcctgca 40484383  T
Q  261 caggaacatcatcaagtaattgcctacac 289  Q
    ||  |||| ||||||||||||||||||||    
T  40484384 caataacaccatcaagtaattgcctacac 40484412  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 9690589 - 9690672
Alignment:
Q  206 taaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagtaattgcctacac 289  Q
    |||||||||||| |||| |||||||| ||||||||||||  || ||||| |||||||  ||||  |||||||||  ||||||||    
T  9690589 taaccatcatgagtatccggatctcactgccacctgtcagaaacattagtctgcacacaaacagtatcaagtaaaagcctacac 9690672  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 19120126 - 19120169
Alignment:
Q  89 cgccaagctacaatggacaccttcataggaacctgcttatgcca 132  Q
    |||||||| | |||||| ||||||||||||||||||||||||||    
T  19120126 cgccaagcaaaaatggaaaccttcataggaacctgcttatgcca 19120169  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 41879140 - 41879085
Alignment:
Q  80 ttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaac 135  Q
    |||||||||||||| || || || |||||||||| ||| |||||||||||||||||    
T  41879140 ttcagcagacgccacgcgaccatagacaccttcaaagggacctgcttatgccaaac 41879085  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 42272978 - 42273030
Alignment:
Q  80 ttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgcca 132  Q
    ||||||| || |||||||||||| |||||||| |  |||||||||||||||||    
T  42272978 ttcagcaaactccaagctacaatagacaccttgaggggaacctgcttatgcca 42273030  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 289
Target Start/End: Original strand, 31706771 - 31706981
Alignment:
Q  80 ttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttgcatctattgttgaggaaactgaagctgtca 179  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||||||||| || || ||||| ||||  || | |||||| || ||    | |||||    
T  31706771 ttcagcatacgccgagctacaatggacaccttcagaggaacctgcttatgccatacaaggtctcttgttgtgtcaactgttgaagagaccagtgttgtca 31706870  T
Q  180 gaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgcc-acctgtcaataatattagcctgcacaggaacatcatcaagta 278  Q
    |||||||||| |   ||| |||| |||| |||||||| || |||||||| || |||| || |||||||||||||||||||||||  |||| |||||||||    
T  31706871 gaatctgataggcacctcacacaatgtacccatcatgcatgtctggatcccactgcccacatgtcaataatattagcctgcacaataacaccatcaagta 31706970  T
Q  279 attgcctacac 289  Q
    ||||| |||||    
T  31706971 attgcatacac 31706981  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 32185855 - 32185905
Alignment:
Q  212 tcatgaatatctggatctcattgccacctgtcaataatattagcctgcaca 262  Q
    |||||||| | |||||| || ||||||||||||| ||||||||||||||||    
T  32185855 tcatgaatgtttggatcccactgccacctgtcaagaatattagcctgcaca 32185905  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 14844229 - 14844185
Alignment:
Q  88 acgccaagctacaatggacaccttcataggaacctgcttatgcca 132  Q
    ||||||||| | |||||| ||||||| ||||||||||||||||||    
T  14844229 acgccaagccagaatggaaaccttcaaaggaacctgcttatgcca 14844185  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 83 - 289
Target Start/End: Original strand, 42259323 - 42259529
Alignment:
Q  83 agcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttgcatctattgttgaggaaactgaagctgtcagaa 182  Q
    |||||||||||||| |||||| | ||||| | ||||||||||||||||||||  || |||||| |||| || |  || || || || | || ||||| ||    
T  42259323 agcagacgccaagcaacaatgaaaacctttagaggaacctgcttatgccaaatgagatctctaattgcgtcaaaagtggaagagaccggagttgtcataa 42259422  T
Q  183 tctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagtaattg 282  Q
    | |||||||   |||||||||| || || ||||| || |||||||  || ||||||||||||| ||||||||||||||||   |||  |||||||||| |    
T  42259423 tgtgataagaacctcgcacagtatatccctcatgtatgtctggatgccactgccacctgtcaagaatattagcctgcacaaatacactatcaagtaatag 42259522  T
Q  283 cctacac 289  Q
    |||||||    
T  42259523 cctacac 42259529  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 289
Target Start/End: Complemental strand, 40167369 - 40167258
Alignment:
Q  178 cagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagt 277  Q
    ||||||| ||||||   ||||||| || || |||||||| || |||||||| ||  |||||||||||| ||||||||||||||||   ||| |||||| |    
T  40167369 cagaatccgataagcacctcgcactgtatacccatcatgtatgtctggatcccacagccacctgtcaagaatattagcctgcacaaatacaccatcaaat 40167270  T
Q  278 aattgcctacac 289  Q
    ||| ||||||||    
T  40167269 aatagcctacac 40167258  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 476261 - 476305
Alignment:
Q  88 acgccaagctacaatggacaccttcataggaacctgcttatgcca 132  Q
    ||||||||| | |||||| ||||||| ||||||||||||||||||    
T  476261 acgccaagccaaaatggaaaccttcaaaggaacctgcttatgcca 476305  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 7716 - 7763
Alignment:
Q  88 acgccaagctacaatggacaccttcataggaacctgcttatgccaaac 135  Q
    ||||||||| | |||||| ||||||| |||||||||||||||||||||    
T  7716 acgccaagccataatggaaaccttcaaaggaacctgcttatgccaaac 7763  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 135
Target Start/End: Original strand, 18634962 - 18634997
Alignment:
Q  100 aatggacaccttcataggaacctgcttatgccaaac 135  Q
    |||||| |||||||||||||||||||||||||||||    
T  18634962 aatggaaaccttcataggaacctgcttatgccaaac 18634997  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 11579631 - 11579585
Alignment:
Q  89 cgccaagctacaatggacaccttcataggaacctgcttatgccaaac 135  Q
    |||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  11579631 cgccaagcaagaatggacaccttcattggaacatgcttatgccaaac 11579585  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 28357940 - 28357986
Alignment:
Q  89 cgccaagctacaatggacaccttcataggaacctgcttatgccaaac 135  Q
    |||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  28357940 cgccaagcaacaatggaaaccttcaaagggacctgcttatgccaaac 28357986  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 3545193 - 3545149
Alignment:
Q  88 acgccaagctacaatggacaccttcataggaacctgcttatgcca 132  Q
    ||||||||| | |||||| ||||||| ||||||||||||||||||    
T  3545193 acgccaagccagaatggaaaccttcaaaggaacctgcttatgcca 3545149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 42579526 - 42579494
Alignment:
Q  100 aatggacaccttcataggaacctgcttatgcca 132  Q
    ||||||||||||||| |||||||||||||||||    
T  42579526 aatggacaccttcattggaacctgcttatgcca 42579494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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