View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_1D_low_8 (Length: 398)
Name: NF3226_1D_low_8
Description: NF3226_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_1D_low_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 218 - 398
Target Start/End: Original strand, 30665639 - 30665819
Alignment:
| Q |
218 |
gtaccgatggattggccggggaaggtgtcaacaatcttgacaatgtcatcttttgcgatattgtcatggcggaaaattccaatgcagacaccaatatggt |
317 |
Q |
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| T |
30665639 |
gtaccgatggattggccggggaaggtgtcaacaatcttgacaatgtcatcttttgcgatattgtcatggcggaaaattccaatgcagacaccaatacggt |
30665738 |
T |
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| Q |
318 |
cttctcttgtaggagcccagtagaatttctccatacgaccatcacagatgagaggagcataaagtgttgagaaatcattac |
398 |
Q |
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| T |
30665739 |
cttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcgttac |
30665819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 30665457 - 30665596
Alignment:
| Q |
24 |
ggtggtccttcctttgagttcacaagcttctttccaattgtttcaataccaactccagaaacccacttcctcacttcatcatcgtacactctagccctca |
123 |
Q |
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| T |
30665457 |
ggtggtccgtcctttgagttcacaagcttctttccaattgtttcaataccaactccagaaacccacttcctcacttcatcatcgtacactctagccctca |
30665556 |
T |
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| Q |
124 |
atgcaccgaagaaatctgcaacaataatagctcgtaaata |
163 |
Q |
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| T |
30665557 |
atgcaccgaagaaatctgcaacaataatagctcgtaaata |
30665596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 34434743 - 34434857
Alignment:
| Q |
27 |
ggtccttcctttgagttcacaagcttctttccaattgtttcaataccaactccagaaacccacttcctcacttcatcatcgtacactctagccctcaatg |
126 |
Q |
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| T |
34434743 |
ggtccttcttttgagttcacaagctttttcccaatggtttcaatgccaacaccagcaatccactttctcacttcatcatcatatactcttgccctaagtg |
34434842 |
T |
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| Q |
127 |
caccgaagaaatctg |
141 |
Q |
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| T |
34434843 |
caccaaagaaatctg |
34434857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 34435088 - 34435181
Alignment:
| Q |
305 |
acaccaatatggtcttctcttgtaggagcccagtagaatttctccatacgaccatcacagatgagaggagcataaagtgttgagaaatcattac |
398 |
Q |
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| T |
34435088 |
acaccaatacgatcttctcttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattac |
34435181 |
T |
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