View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_2D_low_1 (Length: 259)
Name: NF3226_2D_low_1
Description: NF3226_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_2D_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 48746147 - 48745921
Alignment:
| Q |
19 |
atgtccctattttatgtaatattttctataagggagtgagttgtatttgaactagctcctactatagagcactaataaatataatgcatctaaaaagaca |
118 |
Q |
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| T |
48746147 |
atgtccctattttatgtaatattttctataagggagtgagttgtatttgaactagctcctactatagagcactaataaatataatgcatctaaaaagaca |
48746048 |
T |
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| Q |
119 |
catctttggctggatgatgcaatattgtcacatactttatagaaaataaaaataaaaggaaagttcttatcctttttaggagagttaccttctactaatg |
218 |
Q |
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| T |
48746047 |
catctttggctggatgatgcaatattgtcacatactttatagaaaataaaaataaaaggaaagttcttatcctttttaggagagttaccttctactaatg |
48745948 |
T |
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| Q |
219 |
tgggttattgggtcccaatccaacacca |
246 |
Q |
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| T |
48745947 |
t-ggttattgggtcccaatccaacacca |
48745921 |
T |
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