View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_high_17 (Length: 366)
Name: NF3226_high_17
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 3753439 - 3753092
Alignment:
| Q |
1 |
acaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggtaaatggattggatacaatctcagaacca |
100 |
Q |
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| T |
3753439 |
acaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggaaaatggattggatacaatctcagaacca |
3753340 |
T |
|
| Q |
101 |
tcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcgtcgaaagaagaca |
200 |
Q |
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| T |
3753339 |
tcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcgtcgaaagaagaca |
3753240 |
T |
|
| Q |
201 |
aagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttacaaaagggcttcctctaactaaaaagaatcttagatt |
300 |
Q |
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| T |
3753239 |
aagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttataaaagggcttcctctaactaaaaagaatcttagatt |
3753140 |
T |
|
| Q |
301 |
tgaagagggaatgtcgagagtcacaccaagatcactataggatgagat |
348 |
Q |
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| T |
3753139 |
tgaagagggaatgtcaagagtcacaccaagatcactatatgatgagat |
3753092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 4046799 - 4047143
Alignment:
| Q |
1 |
acaagagctgaatttatcaagaattttctcaaatttggtattaggaatgactatgatacggattataccggtaaatggattggatacaatctcagaacca |
100 |
Q |
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||||||||| ||||||||||||||||||||| |||| || ||||| || |||||| || ||||||| ||||||| |||| || ||| |||||| |
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| T |
4046799 |
acaagagctaaatttatcaagaattttctcaccattggaatcaggaacaaccgcgatacgaataataccggaaaatggaccggatttaacctcggaacca |
4046898 |
T |
|
| Q |
101 |
tcatggttgaattttattggtgaagaagtgtatatgatccatttctgagtgttattaagttgaagggtatgtttggtgtttttgtcgtcgaaagaagaca |
200 |
Q |
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||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||| ||||| | || || | ||||| |
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| T |
4046899 |
tcatggttgaagttgattggtgaagaagtgtatatgatccatgtctgattgttattgagttgaagggtatatttggtttttttcttatcaaatggagaca |
4046998 |
T |
|
| Q |
201 |
aagaaactatgttatgaagtgttgtgattgaaagtgaggttggttttgtaactgaagcagttacaaaagggcttcctctaactaaaaagaatcttagatt |
300 |
Q |
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|||||| ||| |||||| ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || |
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| T |
4046999 |
aagaaattatactatgaattgttgtgattgaaagaggtattggttttgtaactgaagcagttaaaaaagggcttcctctaaccaaaaagaatcttaggtt |
4047098 |
T |
|
| Q |
301 |
tgaagagggaatgtcgagagtcacaccaagatcactataggatga |
345 |
Q |
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| T |
4047099 |
tgaagagggaatatcaagagtcacaccaagatcactataagatga |
4047143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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