View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_high_2 (Length: 683)
Name: NF3226_high_2
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 349 - 600
Target Start/End: Original strand, 52987302 - 52987551
Alignment:
| Q |
349 |
gtatactagtatccacattgccaaagtgacaaggatgccacgtcactaaaactcaccacctcatcgtcaaattggggaaagttttgtgagggaccttgaa |
448 |
Q |
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| T |
52987302 |
gtatactagtatccacattggcaaagtgacaaggatgccacgtcactaaaactcaccacctcatcgtcaaattggggaaagttttgtgagggaccttgaa |
52987401 |
T |
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| Q |
449 |
atcaaaaaagaaataaatgtggggtttaaatcgttcnnnnnnnttatatgagtgaaaattttttagattgagaaacatgaaggttaaaagtgtgattagg |
548 |
Q |
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| T |
52987402 |
atcaaaaaagaaataaatgtggggtttaaatcgttcaaaaaaat--tatgagtgaaaattttttagattgagaaacatgaaggttaaaagtgtgattagg |
52987499 |
T |
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| Q |
549 |
tctagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaa |
600 |
Q |
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| T |
52987500 |
cttagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaa |
52987551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 52986994 - 52987181
Alignment:
| Q |
16 |
cattaaaaacatgagaaaatcaacagttactggttgaaagaagcctccgaatttgcttagttgcttccagttgttggatgttatcatccgaccagaccat |
115 |
Q |
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| T |
52986994 |
cattaaaaacatgagaaaatcaacagttactg-ttgaaagaagcctccgaatttgcttagttgcttccagttgttggatgttatcatccgaccagaccat |
52987092 |
T |
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| Q |
116 |
agggctaggcaaacaccaattgaaggtgaaaatgatgatttgggaattgaaagcaaaaccctaatttaagattcagaattaacagactt |
204 |
Q |
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| T |
52987093 |
agggctaggcaaacaccaattgaaggtgaaaatgatgatttgggaattgaaagcaaaaccctaatttaagattcagaattaacagactt |
52987181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 52987196 - 52987238
Alignment:
| Q |
243 |
atttatataggttttggtgtcaagaaggtgggacccggattct |
285 |
Q |
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| T |
52987196 |
atttatataggttttggtgtcaagaaggtgggacccggattct |
52987238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 55634782 - 55634683
Alignment:
| Q |
16 |
cattaaaaacatga--gaaaatcaacagttactggttgaaagaagcctccgaatttgcttagttgcttccagttgttggatgttatcatccgaccagacc |
113 |
Q |
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| T |
55634782 |
cattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagcatccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagacc |
55634683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 54862798 - 54862878
Alignment:
| Q |
31 |
aaaatcaacagttactggttgaaagaagcctccgaatttgcttagttgcttccagttgttggatgttatcatccgaccaga |
111 |
Q |
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| T |
54862798 |
aaaatcaacagttaccgatggaaagacgcttccgaaattccgtagttgcttcgagttgttgactgttatcatcggaccaga |
54862878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 55660009 - 55660053
Alignment:
| Q |
73 |
tagttgcttccagttgttggatgttatcatccgaccagaccatag |
117 |
Q |
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| T |
55660009 |
tagttgcttccaactgttggctgttatcatccgaccagaccatag |
55660053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 16437752 - 16437653
Alignment:
| Q |
16 |
cattaaaaacatga--gaaaatcaacagttactggttgaaagaagcctccgaatttgcttagttgcttccagttgttggatgttatcatccgaccagacc |
113 |
Q |
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| T |
16437752 |
cattaaaaacatgaaagaaaatcaatagttacaattgcaaagaagcatccgaaattgagtagttgcttccagttgttggttgttatcatcggaccagacc |
16437653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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