View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226_high_25 (Length: 309)

Name: NF3226_high_25
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226_high_25
NF3226_high_25
[»] chr1 (11 HSPs)
chr1 (41-124)||(12887782-12887865)
chr1 (214-294)||(12890784-12890860)
chr1 (193-270)||(12893570-12893647)
chr1 (41-127)||(12924105-12924188)
chr1 (41-127)||(12193196-12193282)
chr1 (66-127)||(12894878-12894939)
chr1 (49-88)||(12894054-12894093)
chr1 (127-190)||(12924013-12924076)
chr1 (41-112)||(12881037-12881108)
chr1 (127-182)||(12894794-12894849)
chr1 (41-88)||(12903982-12904029)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 12887865 - 12887782
Alignment:
Q  41 gacaaatattgacaagagaaaaattaatatgaatgcaatcaagcaaaaagtgtcatgcaagttcatatacttcatttgatttat 124  Q
    |||||||||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||||| |||||||||||||||||    
T  12887865 gacaaatattgacaagagaagaattaatatgaatgcatccaagcaaaaagtgtcaggcaagttcatctacttcatttgatttat 12887782  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 12890860 - 12890784
Alignment:
Q  214 tagatagatccaattagttgtttcacccctttatttcaatgtactaactagatgtttagctctacattatgctttgtattt 294  Q
    |||||||||||||||||||||||||| |||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  12890860 tagatagatccaattagttgtttcactcctttatttcaatgt----actagatgtttagctctacattatgctttgtattt 12890784  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 12893647 - 12893570
Alignment:
Q  193 tgtgtttaaagtttcaattgttagatagatccaattagttgtttcacccctttatttcaatgtactaactagatgttt 270  Q
    ||||||||||||||||||||||||||||| ||||||||||| || |  |||||||||||||||||||| |||||||||    
T  12893647 tgtgtttaaagtttcaattgttagatagaaccaattagttggttgattcctttatttcaatgtactaagtagatgttt 12893570  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 12924188 - 12924105
Alignment:
Q  41 gacaaatattgacaagagaaaaattaatatgaatgcaatcaagcaaaaagtgtcatgcaagttcatatacttcatttgatttattta 127  Q
    ||||||||||||||||||||||||||||||   |||||  ||||||||||| ||| |||||||||  ||| ||||||||||||||||    
T  12924188 gacaaatattgacaagagaaaaattaatat---tgcaactaagcaaaaagtctcaggcaagttcaactacctcatttgatttattta 12924105  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 12193282 - 12193196
Alignment:
Q  41 gacaaatattgacaagagaaaaattaatatgaatgcaatcaagcaaaaagtgtcatgcaagttcatatacttcatttgatttattta 127  Q
    |||||| ||||||||||||||||||||||||||| ||| | | |||||||| ||| |||||||||| ||  ||||| ||||||||||    
T  12193282 gacaaacattgacaagagaaaaattaatatgaattcaacccaacaaaaagtctcaggcaagttcatctatgtcattagatttattta 12193196  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 12894939 - 12894878
Alignment:
Q  66 aatatgaatgcaatcaagcaaaaagtgtcatgcaagttcatatacttcatttgatttattta 127  Q
    ||||||||||||| |||||||||||| ||| |||||||||  ||||||||||||||||||||    
T  12894939 aatatgaatgcaaccaagcaaaaagtctcaggcaagttcaactacttcatttgatttattta 12894878  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 12894093 - 12894054
Alignment:
Q  49 ttgacaagagaaaaattaatatgaatgcaatcaagcaaaa 88  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  12894093 ttgacaagagaaaaattaatatgaatgcaagcaagcaaaa 12894054  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 12924076 - 12924013
Alignment:
Q  127 agttcctatatttatcttaaatttttgtgaatatcttatttatatgatgtgaaagtctagtttt 190  Q
    ||||| ||||||||| | ||||||||||||||||| | | |||||||||||||||||| |||||    
T  12924076 agttcttatatttatttcaaatttttgtgaatatcgtgtgtatatgatgtgaaagtctggtttt 12924013  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 12881108 - 12881037
Alignment:
Q  41 gacaaatattgacaagagaaaaattaatatgaatgcaatcaagcaaaaagtgtcatgcaagttcatatactt 112  Q
    |||||| ||| ||||||||||| ||||||| ||||||| | || ||||||| ||| |||||||||| |||||    
T  12881108 gacaaacatttacaagagaaaatttaatatcaatgcaacccagaaaaaagtctcaggcaagttcatctactt 12881037  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 12894849 - 12894794
Alignment:
Q  127 agttcctatatttatcttaaatttttgtgaatatcttatttatatgatgtgaaagt 182  Q
    ||||| ||||||||||| ||||||||||||||||| | | ||||||| ||||||||    
T  12894849 agttcttatatttatctcaaatttttgtgaatatcgtgtgtatatgaggtgaaagt 12894794  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 12904029 - 12903982
Alignment:
Q  41 gacaaatattgacaagagaaaaattaatatgaatgcaatcaagcaaaa 88  Q
    ||||||||||||||||| |||| ||||||||||||| | |||||||||    
T  12904029 gacaaatattgacaagacaaaatttaatatgaatgctaccaagcaaaa 12903982  T

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