View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_high_31 (Length: 260)
Name: NF3226_high_31
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 14021764 - 14022013
Alignment:
| Q |
1 |
aggtggtggatggtgatgatggtgtgtcaacagaaaagggtcaccggcagtaacatctgccgatgactcttttcggtggaagttacggtggcagttacaa |
100 |
Q |
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| T |
14021764 |
aggtggtggatggtgatgatggtgtgtcaacagaaaagggtcaccggcagtaacatctgccgatgactcttttcggtggaagttacggtggcagttacaa |
14021863 |
T |
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| Q |
101 |
gcagcacattttagtgactccaaagttccttcacttcctgccggcataaactcaccgcaaccatcaagagcatgaccaccaatacctacagcatgattct |
200 |
Q |
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| T |
14021864 |
gcagcacattttagtgactccaaagttccttcacttcctgccggcataaactcaccgcaaccatcaagagcatgacccccaatacctacagcatgattct |
14021963 |
T |
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| Q |
201 |
tcagacactctctataccttgctttaccatttccaacaacaccacctatg |
250 |
Q |
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| T |
14021964 |
tcagacactctctataccttgctttaccatttccaacaacaccacctatg |
14022013 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 2494675 - 2494714
Alignment:
| Q |
74 |
cggtggaagttacggtggcagttacaagcagcacatttta |
113 |
Q |
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| T |
2494675 |
cggtggaagttacggtggcagccacaagcagcacatttta |
2494714 |
T |
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