View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_high_32 (Length: 253)
Name: NF3226_high_32
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_32 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 31213739 - 31213845
Alignment:
| Q |
147 |
aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt |
246 |
Q |
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| T |
31213739 |
aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt |
31213838 |
T |
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| Q |
247 |
ttaacat |
253 |
Q |
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||||||| |
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| T |
31213839 |
ttaacat |
31213845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 31219494 - 31219600
Alignment:
| Q |
147 |
aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219494 |
aactccttcaaagatttcaaattattttcaagtcccttattttgaacctttattctctcagacgtcattttttgagtcatttccatctccttcaaagatt |
31219593 |
T |
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| Q |
247 |
ttaacat |
253 |
Q |
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||||||| |
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| T |
31219594 |
ttaacat |
31219600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 31213602 - 31213682
Alignment:
| Q |
10 |
ggagcagagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa |
90 |
Q |
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| T |
31213602 |
ggagccgagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa |
31213682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 31219357 - 31219437
Alignment:
| Q |
10 |
ggagcagagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa |
90 |
Q |
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| T |
31219357 |
ggagccgagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa |
31219437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 47895861 - 47895781
Alignment:
| Q |
10 |
ggagcagagacacaggccttgcagaacagtttgagctagaaacgataacatttgaattctccaaactttctcgatcagcaa |
90 |
Q |
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| T |
47895861 |
ggagccgagacacaggccttgcagaacagtttgagctagaaatgataacatttgaattctccaaactttctcgatcagcaa |
47895781 |
T |
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