View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_high_35 (Length: 251)
Name: NF3226_high_35
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_35 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 41980097 - 41979863
Alignment:
| Q |
17 |
agtaagtgctatgaaggcattgaaggaatcacttcgagttccaggtagaatgggatggaatggtgatccttgtgctcctacaacttgggatgcttgggag |
116 |
Q |
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| T |
41980097 |
agtaagtgctatgaaggcattgaaggaatcgcttcgagttccaggtagaatgggatggaatggtgatccttgtgctcctacaacttgggatgcttgggag |
41979998 |
T |
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| Q |
117 |
ggtgttagctgccgtatgagtgatgataaaactgctctcctcattactgaaatgtaattcattctttcaaattttctgctattttactcttactctcaac |
216 |
Q |
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| T |
41979997 |
ggtgttagctgccgtatgagtgatgataaaactgctctcctcattactgaaatgtaattcattctttcaaattttctgctattttactcttactctcaac |
41979898 |
T |
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| Q |
217 |
tgtcaaccattaatacataatttgtactaatttgc |
251 |
Q |
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| T |
41979897 |
tgtcaaccattaatacataatttgtactaatttgc |
41979863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 22084892 - 22085019
Alignment:
| Q |
27 |
atgaaggcattgaaggaatcacttcgagttccaggtagaatgggatggaatggtgatccttgtgctcctacaacttgggatgcttgggagggtgttagct |
126 |
Q |
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||||| || |||||||| |||||| | ||||| | |||||||| |||||||||||||||||||| ||||| | |||||||||||||||||| |||| | |
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| T |
22084892 |
atgaaagctttgaaggattcacttagggttcctgaaagaatgggttggaatggtgatccttgtgcacctactaattgggatgcttgggagggagttacat |
22084991 |
T |
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| Q |
127 |
gccgtatgagtgatgataaaactgctct |
154 |
Q |
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| T |
22084992 |
gtcgtatgagtaaggataatactgctct |
22085019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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