View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_high_36 (Length: 251)
Name: NF3226_high_36
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 44829970 - 44829739
Alignment:
| Q |
1 |
tttgcctcaacatccnnnnnnncactgtggtaagctcaacatatgttccatgtcccccaccacctcacaaagatcacagccacaaacacccacacccaac |
100 |
Q |
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| T |
44829970 |
tttgcctcaacatcctatttttcactgtggtaagctcaacatatgttccatgtcccccaccacctcacaaagatcacagccacaaacaccca------ac |
44829877 |
T |
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| Q |
101 |
ttgtcctagagacacaattaagtttggtgtgtgtgctgatgtattgggtttgattaatgttgaacttggtaagccaccaaagacaccatgctgctctctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44829876 |
ttgtcctagagacacaattaagtttggtgtgtgtgctgatgtattgggtttgattaatgttgaacttggtaagccaccaaagacaccatgctgctctctc |
44829777 |
T |
|
| Q |
201 |
attgatggtcttgctaatcttgaagctgctgtgtgcct |
238 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
44829776 |
attgatgatcttgctaatcttgaagctgctgtgtgcct |
44829739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 41820354 - 41820590
Alignment:
| Q |
23 |
cactgtggtaagctcaacatatgttccatgtcccccaccacctcacaaagatcacagccacaaacacccaca---------------------cccaact |
101 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||| || |||||| |
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| T |
41820354 |
cactgtggtaagctccacatatgttccatgtcccccaccacctcacaaagatcacggccactcacaccctcatcatccaccttcctccaaaaacccaaca |
41820453 |
T |
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| Q |
102 |
tgtcctagagacacaattaagtttggtgtgtgtgctgatgtattgggtttgattaatgttgaacttggtaagccaccaaagacaccatgctgctctctca |
201 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41820454 |
tgccctagagacacaatcaagtttggtgtgtgtgctgatgtattgggtttgattaatgttgagcttggtaagccaccaaagacaccatgctgctctctca |
41820553 |
T |
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| Q |
202 |
ttgatggtcttgctaatcttgaagctgctgtgtgcct |
238 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
41820554 |
ttgatggtcttgctaatcttgaagctgctgtgtgcct |
41820590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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