View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_high_38 (Length: 250)
Name: NF3226_high_38
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_38 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 939535 - 939299
Alignment:
| Q |
16 |
acacctagatcctctgtttgagtccccagtcaaataaaatatcaaccatcggatataaaagtataacatgaatctaaccgtcaaaatttgagaggaatgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || |
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| T |
939535 |
acacctagatcctctgtttgagtccccagtcaaataaaatctcaaccatcggatataaaagtataacataaatctaaccgtcaaaatttgagtggaacgc |
939436 |
T |
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| Q |
116 |
actggactctagacacccacatgtgcaaatgaaaatacgaaaccaaaccaatat--atatgtctgaaagtgaaaccaaaccaaacaaacgatttaaactc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
939435 |
actggactctagacacccacatgtgcaaatgaaaatacgaaaccaaaccaatatatatatgtctgaaagtgaaaccaaaccaaacaaacgatttaaactc |
939336 |
T |
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| Q |
214 |
taataatggccttatcttctacttcactcatttcacc |
250 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
939335 |
taataatggccttatcttctacttcactcatttcacc |
939299 |
T |
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