View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_high_40 (Length: 245)
Name: NF3226_high_40
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30615762 - 30615525
Alignment:
| Q |
1 |
caccgccgtacgtggtggagcatacgggttaaactgttccggaagccgattatgttgggaggataatcttaatgtgtggagcaattccagctgtattgac |
100 |
Q |
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| T |
30615762 |
caccgccttacgtggttgatcctacgggttcaactgttccggaagccgattatgtttggaggataatcttaatgtttggagcaattccagctgcattgac |
30615663 |
T |
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| Q |
101 |
ttattattcaagatctacaatgcctgaaaccgcgcgttacaccgcacttgttgcgaaggatatggataaagctgtggcagatatgtctaaggttttgaag |
200 |
Q |
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| T |
30615662 |
ttattattcaagatctacaatgcctgaaaccgcgcgttacaccgcacttgttgcgaaggatatggataaagctgtggcagatatgtctaaggttttgaag |
30615563 |
T |
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| Q |
201 |
atggatattaaagctgaacctctaaaagatgatgatgt |
238 |
Q |
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| T |
30615562 |
atggatattaaagctgaacctctaaaagatgatgatgt |
30615525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 26 - 218
Target Start/End: Complemental strand, 30620488 - 30620296
Alignment:
| Q |
26 |
gggttaaactgttccggaagccgattatgttgggaggataatcttaatgtgtggagcaattccagctgtattgacttattattcaagatctacaatgcct |
125 |
Q |
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||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||| |
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| T |
30620488 |
gggttcaactgttccgcaagccgattatgtttggaggataatcttaatgtttggagcaattccagctgcaatgacttattattcaagatctaagatgcct |
30620389 |
T |
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| Q |
126 |
gaaaccgcgcgttacaccgcacttgttgcgaaggatatggataaagctgtggcagatatgtctaaggttttgaagatggatattaaagctgaa |
218 |
Q |
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| T |
30620388 |
gaaactgcgcgttacaccgcacttgttgcaaagaatatggaacaagctgcagcagatatgtctaaggttatgaacatggatattcaagctgaa |
30620296 |
T |
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