View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_high_42 (Length: 239)
Name: NF3226_high_42
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 939074 - 938855
Alignment:
| Q |
1 |
ttgatcgaggagctgatgctactcctgaagaccaacaaagtgttgatcaggttgccttaaaaacctttgatttatgcaacatttcaatatcataagttct |
100 |
Q |
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| T |
939074 |
ttgatcgaggagctgatgctactcctgaagaccaacaaagtgttgatcaggttgccttaaaaacctttgatt---gcaacatttcaatatcataagttct |
938978 |
T |
|
| Q |
101 |
catgcatgcatgttttattgttgattcatggagttcattaatttctaaatagattgcacgccaacttgaagcagttaatccaacaaagcagcctcttaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
938977 |
catgcatgcatgttttattgttgattcatggagttcattaatttctaaatagattgcacgccaacttgaagcagttaatccaacaaagcagcctctcaag |
938878 |
T |
|
| Q |
201 |
tctagtttacttgatggcaaatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
938877 |
tctagtttacttgatggcaaatg |
938855 |
T |
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