View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3226_high_50 (Length: 221)
Name: NF3226_high_50
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_50 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 38531952 - 38531763
Alignment:
| Q |
16 |
taggcacagtttacttgtaatatttccaggcttcattttcttaactttgtgttcatttcaaattgcaaataaggagatagaagactcatgtagtgaataa |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38531952 |
taggcacaatttacttgtaatatttccaggcttcattttcttaactctgtgttcatttcaaattgcaaataaggagatagaagactcatgtagtgaataa |
38531853 |
T |
|
| Q |
116 |
ttgtgatagactgctagnnnnnnngatagacggataacaagggaaaatgcatttttaggaacaatggaaacattgttttggccttctctt |
205 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38531852 |
ttgttatagactgctagaaaaaaagatagacggataacaagggaaaatgcatttttaggaacaatggaaacattgttttggccttctctt |
38531763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 11056680 - 11056632
Alignment:
| Q |
62 |
ttgtgttcatttcaaattgcaaataaggagatagaagactcatgtagtga |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
11056680 |
ttgtgttcattttaaattgcaaataaggagat-gaagactaatgtagtga |
11056632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 25124181 - 25124241
Alignment:
| Q |
65 |
tgttcatttcaaattgcaaataaggagatagaagactcatgtagtgaataattgtgataga |
125 |
Q |
| |
|
||||| ||| ||||||| | |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25124181 |
tgttctttttaaattgctagaaaggagatggaagactcatgtagtgaataattgtgataga |
25124241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 32917968 - 32918045
Alignment:
| Q |
47 |
ttcattttcttaactttgtgttcatttcaaattgcaaataaggagatagaagactcatgtagtgaataattgtgatag |
124 |
Q |
| |
|
|||||||||| | ||| ||||||||| |||||| ||||||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
32917968 |
ttcattttctaatatttatgttcatttgtaattgctaataaggagatggaagacgtatgtagtgaacaattgtgatag |
32918045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 32863676 - 32863606
Alignment:
| Q |
55 |
cttaactttgtgttcatttcaaattgcaaataaggagatagaagactcatgtagtgaataattgtgataga |
125 |
Q |
| |
|
||||| ||||||||||||| ||||||| || || | | ||||||||| |||||||||||| ||||||||| |
|
|
| T |
32863676 |
cttaaatttgtgttcattttaaattgctaacaacgtggtagaagactgatgtagtgaatatatgtgataga |
32863606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 9479084 - 9479026
Alignment:
| Q |
67 |
ttcatttcaaattgcaaataaggagatagaagactcatgtagtgaataattgtgataga |
125 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
9479084 |
ttcattttaaattgctaacaaggagatggaagacccatgtggtgaataattgtgataga |
9479026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 24882033 - 24882095
Alignment:
| Q |
50 |
attttcttaactttgtgttcatttcaaattgcaaataaggagatagaagactcatgtagtgaa |
112 |
Q |
| |
|
||||||| || |||||| |||||| ||||||||||| || |||| || ||||||||||||||| |
|
|
| T |
24882033 |
attttctaaagtttgtgctcattttaaattgcaaatcagcagatggacgactcatgtagtgaa |
24882095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 45301921 - 45301843
Alignment:
| Q |
47 |
ttcattttcttaactttgtgttcatttcaaattgcaaataaggagatagaagactcatgtagtgaataattgtgataga |
125 |
Q |
| |
|
||||||||| || ||| ||||||||| ||||||| || || ||||| |||||||||||||| ||| |||||| ||||| |
|
|
| T |
45301921 |
ttcattttccaaaatttatgttcattttaaattgctaacaaagagattgaagactcatgtagcgaacaattgtaataga |
45301843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 12979131 - 12979095
Alignment:
| Q |
89 |
gagatagaagactcatgtagtgaataattgtgataga |
125 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
12979131 |
gagatggaagactcatgtagtgaacaattgtgataga |
12979095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University