View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_high_6 (Length: 474)
Name: NF3226_high_6
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Complemental strand, 46738903 - 46738467
Alignment:
| Q |
12 |
atgaaaatgaaaaagaggaggtatatggatttaccaaaacagacaccatttgcacttaataatcagatacagattaatttttctactaaaactttctttt |
111 |
Q |
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| T |
46738903 |
atgaagatgaaaaagatgaggtatatggatttaccaaaacagacatcatttgcacttaataatcagattcagattaatttttctactaaaactttctttt |
46738804 |
T |
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| Q |
112 |
taagggattttctgctaaaacttgtttcccaagcatttgtgtaattaattctacgataagtctttaaacaatccaccgaaaaatgaaaccattggcatgc |
211 |
Q |
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| T |
46738803 |
taagggattttctactaaaacttgtttcccaagcatttgtgtaattaattctacgataagtctttaaacaatccaccgaaaaatgaa-----------gc |
46738715 |
T |
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| Q |
212 |
tagccagattatacatacagaccattatcttctcatgtagttgttctttccaaattcaagggttgaattatcaatatacaacatacttcagaagacaatt |
311 |
Q |
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| T |
46738714 |
tagccagattatacatacagaccattatcttctcatgtagttgttctttccaaattcaagggttgaattatcaatatacaacatacttcagaagacaatt |
46738615 |
T |
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| Q |
312 |
tgctcagttagacattcacttcacccaaaatctttcaacatttgaactactatcaccagagcaactttgtcatgccgatatccttctctggatggtaacc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46738614 |
tgctcagttagacattcacttcacccaaaatctttcaacatttgaactactatcaccggagcaactttgtcatgccgatatccttctctggatggtaacc |
46738515 |
T |
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| Q |
412 |
aacattgtttactcaatcggctgatgtgacgctcacacgggttcattt |
459 |
Q |
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| T |
46738514 |
aacattgtttactcaatcggctgatgtgacgctcacacgagttcattt |
46738467 |
T |
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