View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3226_low_10 (Length: 406)
Name: NF3226_low_10
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 3 - 386
Target Start/End: Original strand, 8743080 - 8743460
Alignment:
| Q |
3 |
catgtcgaagaatattactaaattgctaagtaacactttggctcttaacaaagttcaacatcatcaagaacctagctacaaagatgggttcccaacatgg |
102 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8743080 |
catgtccaacaatgttactaaattgctaagtaacactttggctcttaacaaagttcaatatca---agaacctagctacaaagatgggttcccaacatgg |
8743176 |
T |
|
| Q |
103 |
gttaggccaggtgatagaaagctattacaaacttcatcgcctcgacctaacgtagtagtagcaaaagacaggtcgggcaagtacacaaccgttagtgcag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
8743177 |
gttaggccaggtgatagaaagctattacaaacttcatcgcctcgacctaacgtagtagtagcaaaagacgggtcggggaagtacacaactgttagtgcag |
8743276 |
T |
|
| Q |
203 |
ccgtgaatgctataccaaagaataacaaaggtaggtatgttatacatgtgaaggctggtgtctacaatgaacaagttgagataaaggcaaagaatattat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8743277 |
ccgtgaatgctataccaaagaataacaaaggtaggtatgttatacatgtgaaggctggtgtctataatgaacaagttgagataaaggcaaagaatattat |
8743376 |
T |
|
| Q |
303 |
gttggttggagatggtattggtaaaactataatcaccggtagcaaaagcgttggaggaggaaccacaacattccgttctgccac |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8743377 |
gttggttggagatggtattggtaaaactataattactggaagcaaaagcgttggaggaggaaccacaacattccgttctgccac |
8743460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 235 - 380
Target Start/End: Original strand, 8765126 - 8765271
Alignment:
| Q |
235 |
aggtatgttatacatgtgaaggctggtgtctacaatgaacaagttgagataaaggcaaagaatattatgttggttggagatggtattggtaaaactataa |
334 |
Q |
| |
|
|||||||| ||| |||||||||||||||| || ||||||||||||||||| || ||||||||| | |||||||| || || |||||||||||||| |||| |
|
|
| T |
8765126 |
aggtatgtgatatatgtgaaggctggtgtgtataatgaacaagttgagattaaagcaaagaatgtcatgttggtgggtgacggtattggtaaaaccataa |
8765225 |
T |
|
| Q |
335 |
tcaccggtagcaaaagcgttggaggaggaaccacaacattccgttc |
380 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||||| || |||||||| |
|
|
| T |
8765226 |
tcactggtagcaaaagtgttggaggtggcaccactaccttccgttc |
8765271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University