View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_12 (Length: 394)
Name: NF3226_low_12
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 20 - 389
Target Start/End: Complemental strand, 38128611 - 38128261
Alignment:
| Q |
20 |
tatcatgctcctggaatgccttgattgcatggcctttaggattcagagacatttgtatctgctttatatttgagaaaatgaaacgaaaaagggtagttgg |
119 |
Q |
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| T |
38128611 |
tatcatgctcctggaatgccttgattgcatggcctttaggattcagagacatttgtatctgctttatgtttgagaaaatgaaacgaaaaagggtagttgg |
38128512 |
T |
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| Q |
120 |
ttaaatactaccaagctatcagataaggcctaagctactctacctaaaatgaagattttattaacaggttcattacaagtaagattagctctgcagaacc |
219 |
Q |
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| T |
38128511 |
ttaaatactaccaagcta-------------------ctctacctaaaatgaagattttattaacaggttcattacaagtaagattagctctgcagaacc |
38128431 |
T |
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| Q |
220 |
agaaccaaaatagagcgtatagattagctatgcatgtaagctgagctcaaacttcgaacttttgagcaagtccaaatcaaaacttaaatataaatacaaa |
319 |
Q |
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| T |
38128430 |
agaaccaaaatagagcgtatagattagctatgcatgtaagctgagctcaaacttcgaacttttgagcaagtccaaatcaaaacttaaatataaatacaaa |
38128331 |
T |
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| Q |
320 |
aactggttatttggaaaacagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgcttct |
389 |
Q |
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| T |
38128330 |
aactggttatttggaaaacagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatgattct |
38128261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 300
Target Start/End: Original strand, 45266535 - 45266819
Alignment:
| Q |
23 |
catgctcctggaatgccttgattgcatggcctttagg-----attcagagacatttgtatctgctttatatttgagaaaatgaaacgaaaaagggt--ag |
115 |
Q |
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| T |
45266535 |
catgctcttggaatgccttggttgcatggtctttaggttcatattcaaagacatttgtttctgctttacctttgagaaaattaaacgaaaaaaaatgcac |
45266634 |
T |
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| Q |
116 |
ttggttaaatactaccaagctatcagataaggcctaagctactctacctaaaatgaagattttattaacaggttcattacaagtaagattagctctgcag |
215 |
Q |
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|| |||||||| |||||||||||||||||| ||||||||||||||| |||||||| | |||| | ||||||| ||||||||| |||| |||| ||||| |
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| T |
45266635 |
ttcgttaaatattaccaagctatcagataaagcctaagctactctagctaaaatgcaaatttcaagaacaggtgcattacaagctagatcagctatgcag |
45266734 |
T |
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| Q |
216 |
aaccagaaccaaaatagagcgtatagattagctatgcatgtaagctgagctcaaacttcgaacttttgagcaagtccaaatcaaa |
300 |
Q |
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| T |
45266735 |
aaccagaaccaaaataaagcatatagattaactatgcaggtaagttaagctcaaactttatatttttgagcaagttgaaatcaaa |
45266819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 13090281 - 13090337
Alignment:
| Q |
328 |
atttggaaaacagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatg |
384 |
Q |
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| T |
13090281 |
atttggaaaacggatatgtggaatagaaagttttaaacttcttaacttaatcctatg |
13090337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 18336928 - 18336869
Alignment:
| Q |
325 |
gttatttggaaaacagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatg |
384 |
Q |
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| T |
18336928 |
gttatttggaaaacagatatgtggaatagaaagttttaaacttcttaacttaatcctatg |
18336869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 26614446 - 26614505
Alignment:
| Q |
325 |
gttatttggaaaacagatatgtgtaatggaaagtttcaaacttcttaacttaatcctatg |
384 |
Q |
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| T |
26614446 |
gttatttggaaaacggatatgtggaatagaaagttttaaacttcttaacttaatcctatg |
26614505 |
T |
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