View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_13 (Length: 387)
Name: NF3226_low_13
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 9040199 - 9040558
Alignment:
| Q |
19 |
catgttttgcaggtatatgattggatgaacaatagaccagagaggtttaaaatatctgcaagtgacgctgtgattcagttagatctaatcgcaagagttc |
118 |
Q |
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| T |
9040199 |
catgttttgcaggtgtatgattggatgaacaatagaccagagaggtttaaaatatatgcaagtgacgctgtgattcagttagatctaatcgcaagagttc |
9040298 |
T |
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| Q |
119 |
acggaatttcaagcgcagaaggnnnnnnnnctgaacctagccaatgatttaaaagacaagaggacatatggtgccctcttgaatgcatatgttcattcta |
218 |
Q |
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| T |
9040299 |
acggaatttcaagcgcagaaggtttttgttctgaacctagccaatgatttaaaagacaagaggacatatggtgccctcttgaatgcatatgttcattcta |
9040398 |
T |
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| Q |
219 |
gatcaaaagagaaggcagaatctttacctgacataatgaggagtaaaagttacctaaatctatgttttcaagtatactacttgttcaataaaatgtttat |
318 |
Q |
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| T |
9040399 |
gatcaaaagagaaggccgaatctttacctgacataatgaggagtaaaggttacctaaatctatgtttccaagta---tacttgttcaaaaaaatgtttat |
9040495 |
T |
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| Q |
319 |
ttttcagaaaaaatgttcnnnnnnnt---gagtaaatgttgatttttcaagtgtcgcctatgc |
378 |
Q |
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| T |
9040496 |
ttttcagaaaaaatgttcaaaaaaatgaggagtaaatgttgatttttcaagtgtcgtctatgc |
9040558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 9025176 - 9025416
Alignment:
| Q |
19 |
catgttttgcaggtatatgattggatgaacaatagaccagagaggtttaaaatatctgcaagtgacgctgtgattcagttagatctaatcgcaagagttc |
118 |
Q |
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| T |
9025176 |
catgttttgcaggtgtatgattggatgaacaatagaccagagaggtttaaaatatctgcaagtgacgctgtgattcagttagatctaatcgcaagagttc |
9025275 |
T |
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| Q |
119 |
acggaatttcaagcgcagaaggnnnnnnnnctgaacctagccaatgatttaaaag--acaagaggacatatggtgccctcttgaatgcatatgttcattc |
216 |
Q |
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| T |
9025276 |
acggagtttctagtgcagaagg-tttttttctgaacctaaccaatgatttaaaagacacaagaggacgtagggtgccctcttgaatgcatatgttcattc |
9025374 |
T |
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| Q |
217 |
tagatcaaaagagaaggcagaatctttacctgacataatgag |
258 |
Q |
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| T |
9025375 |
tagaacaaaagagaaggcagaatttttactcgacataatgag |
9025416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 1491089 - 1491337
Alignment:
| Q |
18 |
acatgttttgcaggtatatgattggatgaacaatagaccagagaggtttaaaatatctgcaagtgacgctgtgattcagttagatctaatcgcaagagtt |
117 |
Q |
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| T |
1491089 |
acatgttttgcaggtatatgattggatgaacaatagaccagagaggtttagaatatctgcaagtgatgttgcgattcagttagatctaatcgcaagagtt |
1491188 |
T |
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| Q |
118 |
cacggaatttcaagcgcagaaggnnnnnnnnctgaacctagccaatgatttaaaagacaagaggacatatggtgccctcttgaatgcatatgttcattct |
217 |
Q |
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| T |
1491189 |
cacggagtttctagtgcagaaag-tttttttctgaacctaaccaatgatttaaaagacaagagaacatatggtgccctcttgaatgcatatgttcattct |
1491287 |
T |
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| Q |
218 |
agatcaaaagagaaggcagaatctttacctgacataatgaggagtaaaag |
267 |
Q |
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| T |
1491288 |
agatcaagagaaaaggcagaatctttactcgaagtaatgaggagtaaaag |
1491337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 11831900 - 11831652
Alignment:
| Q |
18 |
acatgttttgcaggtatatgattggatgaacaatagaccagagaggtttaaaatatctgcaagtgacgctgtgattcagttagatctaatcgcaagagtt |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||| |
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| T |
11831900 |
acatgttttgcaggtatatgattggataaacaatagaccagagaggtttagaatatctgcaagtgatgttgcgattcagttagatctaatcgcaagagtt |
11831801 |
T |
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| Q |
118 |
cacggaatttcaagcgcagaaggnnnnnnnnctgaacctagccaatgatttaaaagacaagaggacatatggtgccctcttgaatgcatatgttcattct |
217 |
Q |
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|||||| |||| || |||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
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| T |
11831800 |
cacggagtttctagtgcagaagg-tttttttctgaacctaaccaatgatttaaaagacaagagaacatacggtgccctcttgaatgcatacgttcattct |
11831702 |
T |
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| Q |
218 |
agatcaaaagagaaggcagaatctttacctgacataatgaggagtaaaag |
267 |
Q |
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| T |
11831701 |
agatcaagagaaaaggcagaatctttactcgaagtaatgaggagtaaaag |
11831652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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