View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3226_low_14 (Length: 384)
Name: NF3226_low_14
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 31921767 - 31921417
Alignment:
| Q |
1 |
tgccctgaaccctacatagatcacctctgtttgatttaattagtgcattgcatgagatagcgtccaagctgcacatacttattcttgctgcttgatgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31921767 |
tgccctgaaccctacatagatcacctccgtttgatttaattagtgcattgcatgagatagcgtccaagctgcacatacttattcttgctgcttgatgcat |
31921668 |
T |
|
| Q |
101 |
gcttcagtgcattttgcagcgcctattgcgattatgggcaatgacttttgaaagctcccattacataaactaatcctacgacaactaattgctatgatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31921667 |
gcttcagtgcattttgcagcgcctattgcgattatgggcaatgacttttgaaagctcccattacataaactaatcctacgacaactaattgctatgatga |
31921568 |
T |
|
| Q |
201 |
tatcttgaaatggtttgtggagcatctatttaagctccactacctctattgtagacaacagtaatttgtttgctcgtacttccaatcatcatctcttggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31921567 |
tatcttgaaatggtttgtggagcatctatttaagctccactacctctattgtagacaacagtaatttgtttgctcgtacttccaatcatcatctcttggt |
31921468 |
T |
|
| Q |
301 |
ctttgggttctggattatagtgccattgatcgcatgtgtagatataaatag |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
31921467 |
ctttgggttctggattatagtgccattgattgcatctgtagatataaatag |
31921417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University