View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226_low_15 (Length: 369)
Name: NF3226_low_15
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 18029705 - 18029889
Alignment:
| Q |
18 |
acaaatatcaacttaaactactatattac-------aaggtagcccgttactatcatgtgtttcttaaaatcaaatagtctaatgacaaaaatcacactc |
110 |
Q |
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| T |
18029705 |
acaaatatcaacttaaactactatattacaatttacaaggtagcccgttactatcatgtgtttcttaaaatcaaatagtctaatgacaaaaatcacacac |
18029804 |
T |
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| Q |
111 |
ataaagcatgaataaatggagtattgtggattcaaattcaaattcttacatatcaaatacccctaatgttatcaagtaagttgta |
195 |
Q |
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| T |
18029805 |
ataaagcatgaataaatggagtattgtggattcaaattcaaattcttacatatcaaatacccctaaagttatcaagtaagttgta |
18029889 |
T |
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Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 18029887 - 18029984
Alignment:
| Q |
258 |
gtaccaattcaatcatcacttacattctcttgttgccacatctcatcccaattcttctcaacttcttcaaatcccaacaaagaaccttctctctctgc |
355 |
Q |
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| T |
18029887 |
gtaccaattcaatcatcacttacattctcttgttgccacatctcatcccaattcttctcaacttcttcaaatcccaacaaagaaccttctctctctgc |
18029984 |
T |
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