View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3226_low_18 (Length: 365)

Name: NF3226_low_18
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3226_low_18
NF3226_low_18
[»] chr1 (19 HSPs)
chr1 (11-350)||(40662894-40663233)
chr1 (128-255)||(34915014-34915141)
chr1 (183-278)||(3515821-3515916)
chr1 (156-255)||(16556456-16556555)
chr1 (70-253)||(28267921-28268100)
chr1 (183-253)||(11049253-11049323)
chr1 (294-348)||(51500080-51500134)
chr1 (156-257)||(47899231-47899330)
chr1 (187-255)||(7524120-7524188)
chr1 (184-255)||(28287346-28287417)
chr1 (183-244)||(28083909-28083970)
chr1 (183-255)||(30557507-30557577)
chr1 (192-245)||(36660503-36660556)
chr1 (183-236)||(47892417-47892470)
chr1 (183-255)||(1514346-1514418)
chr1 (183-255)||(30850409-30850481)
chr1 (220-255)||(2555941-2555976)
chr1 (156-190)||(52059303-52059337)
chr1 (184-229)||(51500870-51500915)
[»] chr5 (11 HSPs)
chr5 (65-255)||(15368259-15368448)
chr5 (158-247)||(2937600-2937689)
chr5 (159-255)||(29821954-29822054)
chr5 (183-253)||(6951317-6951387)
chr5 (65-106)||(2864461-2864502)
chr5 (183-255)||(9818737-9818810)
chr5 (183-247)||(18851100-18851164)
chr5 (183-245)||(22226256-22226318)
chr5 (64-109)||(2937731-2937776)
chr5 (306-350)||(117387-117431)
chr5 (187-255)||(42858115-42858183)
[»] chr3 (12 HSPs)
chr3 (65-255)||(31708249-31708435)
chr3 (73-255)||(31012914-31013093)
chr3 (181-253)||(31492768-31492839)
chr3 (156-204)||(24649424-24649472)
chr3 (300-348)||(36550068-36550116)
chr3 (183-255)||(40147860-40147932)
chr3 (65-144)||(14021835-14021913)
chr3 (303-350)||(42484403-42484452)
chr3 (183-255)||(27266804-27266876)
chr3 (201-245)||(32523360-32523404)
chr3 (203-247)||(41596167-41596211)
chr3 (207-255)||(46853544-46853592)
[»] chr4 (17 HSPs)
chr4 (177-255)||(52965864-52965942)
chr4 (158-256)||(38716545-38716636)
chr4 (183-255)||(32818380-32818452)
chr4 (201-250)||(45011895-45011944)
chr4 (183-247)||(8604640-8604704)
chr4 (187-247)||(35065070-35065130)
chr4 (183-246)||(1048720-1048783)
chr4 (300-350)||(20712719-20712769)
chr4 (155-253)||(53655146-53655243)
chr4 (201-254)||(21691223-21691276)
chr4 (176-253)||(44278979-44279056)
chr4 (183-239)||(1616394-1616449)
chr4 (65-121)||(6463888-6463944)
chr4 (183-255)||(26617471-26617543)
chr4 (183-247)||(30357515-30357579)
chr4 (193-257)||(33843990-33844054)
chr4 (58-106)||(53655047-53655095)
[»] chr7 (6 HSPs)
chr7 (183-255)||(41386825-41386897)
chr7 (164-245)||(1442557-1442638)
chr7 (183-255)||(27571865-27571937)
chr7 (224-255)||(32295228-32295259)
chr7 (187-236)||(28725081-28725130)
chr7 (209-253)||(42816480-42816524)
[»] chr2 (8 HSPs)
chr2 (181-255)||(5533041-5533115)
chr2 (183-246)||(42982547-42982610)
chr2 (183-255)||(43501128-43501198)
chr2 (155-256)||(17281383-17281485)
chr2 (183-245)||(42740980-42741042)
chr2 (220-257)||(31415375-31415412)
chr2 (183-229)||(30503212-30503258)
chr2 (193-255)||(33019166-33019228)
[»] chr8 (9 HSPs)
chr8 (183-255)||(4662913-4662985)
chr8 (183-255)||(13384664-13384736)
chr8 (183-255)||(32927895-32927967)
chr8 (183-257)||(35494993-35495067)
chr8 (183-255)||(38868501-38868573)
chr8 (184-255)||(26100156-26100227)
chr8 (183-255)||(15677825-15677898)
chr8 (183-255)||(37684408-37684480)
chr8 (183-247)||(32994260-32994324)
[»] chr6 (10 HSPs)
chr6 (155-242)||(10669486-10669573)
chr6 (183-247)||(4910911-4910975)
chr6 (182-253)||(6654102-6654173)
chr6 (200-255)||(46298-46355)
chr6 (183-255)||(1485156-1485228)
chr6 (183-247)||(7952727-7952791)
chr6 (203-255)||(17225875-17225927)
chr6 (183-255)||(25195853-25195925)
chr6 (183-229)||(765422-765468)
chr6 (207-255)||(34027427-34027475)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 40663233 - 40662894
Alignment:
Q  11 cagagacaaatgaacgctcgtaatagtttgagatgatggaaatggattaagagggtgtttggtttcacttttagatgccttaaaagtgcttttcaaatgt 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  40663233 cagagacaaatggacgctcgtaatagtttgagatgatggaaatggattaagagggtgtttgttttcacttttagatgccataaaagtgcttttcaaatgt 40663134  T
Q  111 caaaagcaatttacactctataaaattatatttgacannnnnnngagaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagct 210  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40663133 caaaagcaatttacactctataaaattatatttgacatttttttgagaaatcaattttatagactaaaaacaattctacttaaagctagtatttgtagct 40663034  T
Q  211 tttgattcaagaattgattctaacacacaaatttataattcaacttaatgtacccaaacacaaatcacnnnnnnnngcaactaactataagtcagaatca 310  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  40663033 tttgattcaagaattgat--taacacacaaatttataattcaacttaatgtacccaaacacaaatcacttttttttgcaactaactataagtcagaatca 40662936  T
Q  311 attcactc--aattaattcttgtcaaagcagaaccaaacata 350  Q
    ||||||||  ||||||||||||||||| ||||||||||||||    
T  40662935 attcactcaaaattaattcttgtcaaaacagaaccaaacata 40662894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 34915014 - 34915141
Alignment:
Q  128 ctataaaattatatttgacannnnnnngagaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattga 227  Q
    |||||||||||| |||||||       |||||||||||||||  ||||||||  ||||||| || |||||| | ||||||||||||||||| ||||||||    
T  34915014 ctataaaattatgtttgacatgattttgagaaatcaattttgaggactaaaagaaattctagttgaagctattctttgtagcttttgattctagaattga 34915113  T
Q  228 ttctaacacacaaatttataattcaact 255  Q
    ||||||||||| | ||||||||||||||    
T  34915114 ttctaacacaccattttataattcaact 34915141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 3515821 - 3515916
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaacttaatgtacccaaacacaaatcac 278  Q
    ||||||||| ||||||| | ||||||||||| |||| |||||||||| | |||| |||| |||| |||||||| |||||| |||||||||||||||    
T  3515821 attctacttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaaattatcattcaactaaatgtatccaaacacaaatcac 3515916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 16556456 - 16556555
Alignment:
Q  156 agaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    |||||||| ||||| ||||||||||||| || |||  || ||| |||||  | |||||||||| |||||||||||| ||||||||||| |||||||||||    
T  16556456 agaaatcagttttggagactaaaaacaactcgactcgaaactactatttacaacttttgattctagaattgattctgacacacaaattcataattcaact 16556555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 253
Target Start/End: Complemental strand, 28268100 - 28267921
Alignment:
Q  70 tggtttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatttacactctataaaattatatttgacannnnnnngagaaatcaattttg 169  Q
    |||||||||||||||||| |||| ||||| ||||||| ||||||||||||||   |||| |||||||| | |||| ||        ||||||||||||||    
T  28268100 tggtttcacttttagatgtcttagaagtgtttttcaagtgtcaaaagcaattctaactccataaaattttgtttggcattttttt-agaaatcaattttg 28268002  T
Q  170 tagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 253  Q
     |||||||||  ||||||||||  || || | ||||||| || |||||| |||||| ||| |||| || |||||||||||||||    
T  28268001 gagactaaaaggaattctactt--aggtact-tttgtagtttatgattctagaattaattttaacgcataaatttataattcaa 28267921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 11049253 - 11049323
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 253  Q
    ||||||||| ||||||| |||||||||||||||||| | |||||||| | ||||||||||||||| |||||    
T  11049253 attctacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaa 11049323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 51500134 - 51500080
Alignment:
Q  294 actataagtcagaatcaattcactcaattaattcttgtcaaagcagaaccaaaca 348  Q
    ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  51500134 actattagtcaaaatcaattcactcaattaattcttgtcaacgcagaaccaaaca 51500080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 47899231 - 47899330
Alignment:
Q  156 agaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||||||||  |||||||||||||||||||  |||||| ||||||||| |||| |||  ||| |||||  ||| ||||||| |||| ||||||||    
T  47899231 agaaatcaattttgaggactaaaaacaattctactagaagctactatttgtagttttttattttagatttgat--taaaacacaaacttatgattcaact 47899328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 7524120 - 7524188
Alignment:
Q  187 tacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||| ||| ||| |||||||||||||||||  |||||||||| | ||||||||||||||| |||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaact 7524188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 28287417 - 28287346
Alignment:
Q  184 ttctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    |||||||| |||| || |||||||||||||||||  |||||||||| |||||| |||||||||  |||||||    
T  28287417 ttctacttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgttcaact 28287346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 28083970 - 28083909
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaattt 244  Q
    ||||||||| ||||||| |||||||||||||||||| | |||| ||| | ||||||||||||    
T  28083970 attctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaattt 28083909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 30557507 - 30557577
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    |||||| || ||||||| |||||||| ||||||||| |||||||||| |  |||||||||||||| |||||||    
T  30557507 attctagttgaagctaggatttgtagtttttgattctagaattgatttt--cacacaaatttatagttcaact 30557577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 36660556 - 36660503
Alignment:
Q  192 aaagctagtatttgtagcttttgattcaagaattgattctaacacacaaattta 245  Q
    ||||||| ||||| ||||||||||||| | |||||| |||||||||||||||||    
T  36660556 aaagctactatttctagcttttgattctaaaattgaatctaacacacaaattta 36660503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 47892470 - 47892417
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacac 236  Q
    ||||||||||||||||| | ||| |||||||||||| |||||||||| ||||||    
T  47892470 attctacttaaagctagaaattgaagcttttgattctagaattgattttaacac 47892417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 1514346 - 1514418
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| ||||||| ||||||||||||| |||  | |||||||| | ||||||||||||||  |||||||    
T  1514346 attctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaact 1514418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 30850481 - 30850409
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| || |||| |||||||| |||| |||  |||||||||| ||||| ||||||||||| |||||||    
T  30850481 attctacttgaaactaggatttgtagtttttaattttagaattgattttaacatacaaatttatagttcaact 30850409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 2555941 - 2555976
Alignment:
Q  220 agaattgattctaacacacaaatttataattcaact 255  Q
    |||||||||||||||| |||||||||||||||||||    
T  2555941 agaattgattctaacatacaaatttataattcaact 2555976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 52059303 - 52059337
Alignment:
Q  156 agaaatcaattttgtagactaaaaacaattctact 190  Q
    |||||||||||||| ||||||||||||||||||||    
T  52059303 agaaatcaattttggagactaaaaacaattctact 52059337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 51500915 - 51500870
Alignment:
Q  184 ttctacttaaagctagtatttgtagcttttgattcaagaattgatt 229  Q
    |||||||| || |||| |||||||||||||||||| ||||||||||    
T  51500915 ttctacttgaacctaggatttgtagcttttgattctagaattgatt 51500870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 65 - 255
Target Start/End: Original strand, 15368259 - 15368448
Alignment:
Q  65 gtgtttggtttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatttacactctataaaattatatttgacannnnnnngagaaatcaa 164  Q
    |||||||||||||||| |||||| | || ||||||||||||| ||  ||||||||| |  ||||||||||||||| | || ||       ||||||||||    
T  15368259 gtgtttggtttcacttctagatgtcctagaagtgcttttcaagtgctaaaagcaatctt-actctataaaattatgtatggcattttatcgagaaatcaa 15368357  T
Q  165 ttttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    |||||   ||||||| ||||||||||| |||||| || ||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  15368358 ttttgggaactaaaagcaattctacttgaagctactagttgtaacttttgattatagaattgattctaacacacaaatttataattcaact 15368448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 2937689 - 2937600
Alignment:
Q  158 aaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 247  Q
    ||||||||||||   |||||||  ||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||||||||    
T  2937689 aaatcaattttgggaactaaaagaaattctacttaaagctactatttgtagcctttgattctagaattgattataacacacaaatttata 2937600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 29821954 - 29822054
Alignment:
Q  159 aatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgat----tcaagaattgattctaacacacaaatttataattcaac 254  Q
    ||||||||||| ||| |||||||||||||| || |||||| ||||||||| |||||||    | |  |||||||||||||| |||||||||| |||||||    
T  29821954 aatcaattttggagattaaaaacaattctatttgaagctattatttgtagtttttgattttataattaattgattctaacatacaaatttatcattcaac 29822053  T
Q  255 t 255  Q
    |    
T  29822054 t 29822054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 6951387 - 6951317
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 253  Q
    ||||||||| ||| ||| |||||||||||||||||| | ||||||||   ||||| |||||||||||||||    
T  6951387 attctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaa 6951317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 2864461 - 2864502
Alignment:
Q  65 gtgtttggtttcacttttagatgccttaaaagtgcttttcaa 106  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  2864461 gtgtttggtttcacttttagatgctttagaagtgcttttcaa 2864502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 9818737 - 9818810
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattga-ttctaacacacaaatttataattcaact 255  Q
    ||||||||| ||||||  |||||||||||||||||| |||||||| || | | ||||||||||||| |||||||    
T  9818737 attctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaact 9818810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 18851164 - 18851100
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 247  Q
    ||||||||| ||||||  |||||||||||||||||  |||||||||| | ||||||| |||||||    
T  18851164 attctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttata 18851100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 22226318 - 22226256
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaattta 245  Q
    ||||||||| ||| |||||||||||||||||||||  |||||| | | | |||||||||||||    
T  22226318 attctacttgaagatagtatttgtagcttttgattttagaattaacttttacacacaaattta 22226256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 2937776 - 2937731
Alignment:
Q  64 ggtgtttggtttcacttttagatgccttaaaagtgcttttcaaatg 109  Q
    ||||||||||||||  |||||||||| || ||||||||||||||||    
T  2937776 ggtgtttggtttcatgtttagatgccatagaagtgcttttcaaatg 2937731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 117431 - 117387
Alignment:
Q  306 aatcaattcactcaattaattcttgtcaaagcagaaccaaacata 350  Q
    |||||||||||||||| |||| |||||||  ||||||||||||||    
T  117431 aatcaattcactcaatcaatttttgtcaacacagaaccaaacata 117387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 42858115 - 42858183
Alignment:
Q  187 tacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||| ||| ||| ||||| ||||||| |||| | |||||||| | ||||||||||||||| |||||||    
T  42858115 tacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaact 42858183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 31708435 - 31708249
Alignment:
Q  65 gtgtttggtttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatttacactctataaaattatatttgacannnnnnngagaaatcaa 164  Q
    |||||| ||||||||||||||||||| | ||||||||||||| || ||||||||| |   ||| ||   |||||| |||| ||       || |||||||    
T  31708435 gtgttttgtttcacttttagatgcctaataagtgcttttcaagtgccaaaagcaactctaactata---aattatgtttggcatttttt-gataaatcaa 31708340  T
Q  165 ttttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||| |  |||||||| ||||| ||||  |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31708339 tttcgaggactaaaagcaattatactcgaagctactatttgtagcttttgattctagaattgattctaacacacaaatttataattcaact 31708249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 31012914 - 31013093
Alignment:
Q  73 tttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatttacactctataaaattatatttgacannnnnnngagaaatcaattttgtag 172  Q
    |||||||| ||||||||||| ||||||||||||| || ||||||||| | | |||||||||| |||| |||| ||        | ||||||||||||  |    
T  31012914 tttcacttctagatgccttataagtgcttttcaagtgccaaaagcaactca-actctataaa-ttatgtttggcatttttca-ataaatcaattttgggg 31013010  T
Q  173 actaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||| ||||||||||| || ||| |||||||||| ||||| || |||||||||||||||||||||||||| |||||||||    
T  31013011 actaaaagcaattctacttgaacctactatttgtagcctttgaatctagaattgattctaacacacaaatttagaattcaact 31013093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 31492768 - 31492839
Alignment:
Q  181 caattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 253  Q
    |||||||| || |||| | ||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  31492768 caattctatttgaagcaactatttgtagcttttgattctagaattgatt-taacacacaaatttataattcaa 31492839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 24649472 - 24649424
Alignment:
Q  156 agaaatcaattttgtagactaaaaacaattctacttaaagctagtattt 204  Q
    ||||| |||||||||||||||||||||||| ||||||||| || |||||    
T  24649472 agaaaacaattttgtagactaaaaacaattttacttaaagttattattt 24649424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 36550116 - 36550068
Alignment:
Q  300 agtcagaatcaattcactcaattaattcttgtcaaagcagaaccaaaca 348  Q
    ||||| |||||||||||||||| |||||||||||| ||||| |||||||    
T  36550116 agtcaaaatcaattcactcaatcaattcttgtcaatgcagatccaaaca 36550068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 40147932 - 40147860
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| ||||||| ||||| |||||||||||| ||||||||||  |||||   ||||||| ||||||||    
T  40147932 attctacttcaagctagaatttggagcttttgattctagaattgatttcaacacttgaatttatcattcaact 40147860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 14021835 - 14021913
Alignment:
Q  65 gtgtttggtttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatttacactctataaaattatatttg 144  Q
    |||||||||||||||| |||||| |||| ||||| ||||||| || |||||||||||   |||| |||||||||| ||||    
T  14021835 gtgtttggtttcacttctagatg-cttagaagtgtttttcaagtgacaaaagcaattctaactccataaaattatgtttg 14021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 42484452 - 42484403
Alignment:
Q  303 cagaatcaattcactca--attaattcttgtcaaagcagaaccaaacata 350  Q
    |||||||||||||||||  ||||||||||||||||||||||  |||||||    
T  42484452 cagaatcaattcactcataattaattcttgtcaaagcagaagtaaacata 42484403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 27266876 - 27266804
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| ||||||| | ||||||||  ||||||||||||| ||| | |||| |||||||||  |||||||    
T  27266876 attctacttgaagctagaaattgtagctaatgattcaagaattaatttttacactcaaatttattgttcaact 27266804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 32523404 - 32523360
Alignment:
Q  201 atttgtagcttttgattcaagaattgattctaacacacaaattta 245  Q
    |||||||||||||||||| | |||||||| | |||||||||||||    
T  32523404 atttgtagcttttgattctaaaattgatttttacacacaaattta 32523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 41596211 - 41596167
Alignment:
Q  203 ttgtagcttttgattcaagaattgattctaacacacaaatttata 247  Q
    ||||||||||||||| ||||||||||| | |||||||| ||||||    
T  41596211 ttgtagcttttgattaaagaattgatttttacacacaagtttata 41596167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 46853592 - 46853544
Alignment:
Q  207 agcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    |||||||||||| |||||||||| |||||| |||||||||  |||||||    
T  46853592 agcttttgattctagaattgattttaacactcaaatttattgttcaact 46853544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 52965942 - 52965864
Alignment:
Q  177 aaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||| ||||||||| ||| || ||||| ||||||||||||| | |||||||||||||||| |||||||||||||||||    
T  52965942 aaaacgattctacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttataattcaact 52965864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 38716545 - 38716636
Alignment:
Q  158 aaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaactt 256  Q
    |||||||||||| ||| |||||||||||||| || |||||| |||||||||||||||||       |||||||||||  ||||||||||||||||||||    
T  38716545 aaatcaattttggagattaaaaacaattctagttgaagctactatttgtagcttttgat-------ttgattctaacttacaaatttataattcaactt 38716636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 32818452 - 32818380
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    |||||| || ||||||| |||||||||||||||||| |||||||||| |  |||||||||||||| |||||||    
T  32818452 attctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaact 32818380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 45011895 - 45011944
Alignment:
Q  201 atttgtagcttttgattcaagaattgattctaacacacaaatttataatt 250  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  45011895 atttgtagcttttgattctagaattgattttcacacacaaatttataatt 45011944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 8604704 - 8604640
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 247  Q
    ||||||||| ||||||  |||||||||||| ||||| |||||||||| | |||||||||||||||    
T  8604704 attctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttata 8604640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 35065070 - 35065130
Alignment:
Q  187 tacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 247  Q
    ||||| ||||||||||||||  |||||||||| |||||||||| | |||||||||||||||    
T  35065070 tacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttata 35065130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 1048720 - 1048783
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttat 246  Q
    ||||||||||||| ||| |||| |||||||| |||| | |||||||||| |||| |||||||||    
T  1048720 attctacttaaagttagaatttatagcttttaattctataattgattcttacactcaaatttat 1048783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 20712769 - 20712719
Alignment:
Q  300 agtcagaatcaattcactcaattaattcttgtcaaagcagaaccaaacata 350  Q
    |||| ||||||||||||||||  ||||||| ||| ||||||||||||||||    
T  20712769 agtcggaatcaattcactcaaccaattcttatcacagcagaaccaaacata 20712719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 53655146 - 53655243
Alignment:
Q  155 gagaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 253  Q
    ||||||||||||| | |||||||||||| |||||||| |||||| |||||  || ||| ||||  | |||  ||| ||||||||||||||||| |||||    
T  53655146 gagaaatcaattt-gaagactaaaaacatttctacttgaagctattatttaaagatttggattttaaaatcaattttaacacacaaatttatagttcaa 53655243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 21691276 - 21691223
Alignment:
Q  201 atttgtagcttttgattcaagaattgattctaacacacaaatttataattcaac 254  Q
    |||||||||||||| ||  |||||||||| | ||||||||||||||| ||||||    
T  21691276 atttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaac 21691223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 44279056 - 44278979
Alignment:
Q  176 aaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 253  Q
    |||| ||||||||||| || ||| ||| |||| ||||| |||  | |||||||||||||||| |||||| ||||||||    
T  44279056 aaaatcaattctacttgaaactactatatgtatctttttattttaaaattgattctaacacataaatttttaattcaa 44278979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 1616394 - 1616449
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacaca 239  Q
    ||||||||||| ||||  |||||||||||||||||| |||||||||||  |||||||    
T  1616394 attctacttaa-gctacaatttgtagcttttgattctagaattgattcccacacaca 1616449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 6463888 - 6463944
Alignment:
Q  65 gtgtttggtttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatt 121  Q
    |||||| |||||||||||| |||||| | ||||||||||||| || ||||| |||||    
T  6463888 gtgttttgtttcacttttaaatgcctcagaagtgcttttcaattggcaaaaacaatt 6463944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 26617471 - 26617543
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| ||||||| || ||||||||||||||  | |||||||| | | | | |||||||||||||||||    
T  26617471 attctacttgaagctagaatctgtagcttttgattataaaattgatttttatagataaatttataattcaact 26617543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 30357515 - 30357579
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 247  Q
    ||||||||| |||||   |||||||||||||||||  | |||||||| | |||||||||||||||    
T  30357515 attctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttata 30357579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 33843990 - 33844054
Alignment:
Q  193 aagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaactta 257  Q
    ||||||| | ||| |||||||||||| | |||||||| |||||| |||||||||  |||||||||    
T  33843990 aagctagaaattggagcttttgattctaaaattgattttaacactcaaatttattgttcaactta 33844054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 53655047 - 53655095
Alignment:
Q  58 taagagggtgtttggtttcacttttagatgccttaaaagtgcttttcaa 106  Q
    ||||||| |||||||||||||| ||||||| |||| ||||| |||||||    
T  53655047 taagaggatgtttggtttcactcttagatgtcttataagtgtttttcaa 53655095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 41386897 - 41386825
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| ||||||| ||||||||||||| |||| |||||||||  | |||||||||||||||||||||||    
T  41386897 attctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataattcaact 41386825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 1442557 - 1442638
Alignment:
Q  164 attttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaattta 245  Q
    |||||| | ||||||| ||||||||||| ||| || ||| | ||||||||||||| | |||||||||||| |||||||||||    
T  1442557 attttggatactaaaagcaattctacttgaagttattatgtatagcttttgattctataattgattctaaaacacaaattta 1442638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 27571865 - 27571937
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| ||| ||| | ||| |||||||||||| |||||||||| |||||| ||| ||||| ||||||||    
T  27571865 attctacttgaagttagaaattggagcttttgattctagaattgattttaacactcaagtttattattcaact 27571937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 255
Target Start/End: Original strand, 32295228 - 32295259
Alignment:
Q  224 ttgattctaacacacaaatttataattcaact 255  Q
    ||||||||||||||||||||||||||||||||    
T  32295228 ttgattctaacacacaaatttataattcaact 32295259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 28725130 - 28725081
Alignment:
Q  187 tacttaaagctagtatttgtagcttttgattcaagaattgattctaacac 236  Q
    ||||| ||||||| |||||||||||||||||| | |||||||||| ||||    
T  28725130 tacttgaagctagaatttgtagcttttgattctataattgattctcacac 28725081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 42816524 - 42816480
Alignment:
Q  209 cttttgattcaagaattgattctaacacacaaatttataattcaa 253  Q
    ||||| |||| |||||||||| | |||||||||||||||||||||    
T  42816524 cttttaattctagaattgattttcacacacaaatttataattcaa 42816480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 5533115 - 5533041
Alignment:
Q  181 caattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||||| |||||| |||||||||||||||||||   ||||||||  |||||| |||||||||||||||||    
T  5533115 caattctacttgaagctactatttgtagcttttgattcttaaattgatttaaacacataaatttataattcaact 5533041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 42982547 - 42982610
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttat 246  Q
    ||||||||| ||||||| | |||||||||||||||| |||||||||| | ||||||||||||||    
T  42982547 attctacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttat 42982610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 43501128 - 43501198
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| || |||| |||||||||||||||||  |||||||||||||  ||||||| |||||||||||||    
T  43501128 attctacttgaaactaggatttgtagcttttgattttagaattgattcta--acacaaaattataattcaact 43501198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 17281383 - 17281485
Alignment:
Q  155 gagaaatcaattttgtag-actaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 253  Q
    ||||||||||||||  || ||| ||||||||| ||||| |||||| ||| |||||||||  |||  | |||||||| ||| |||||||||||||||| ||    
T  17281383 gagaaatcaatttttgaggacttaaaacaattatacttgaagctactatctgtagctttcaattttaaaattgattttaatacacaaatttataattgaa 17281482  T
Q  254 ctt 256  Q
    |||    
T  17281483 ctt 17281485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 42740980 - 42741042
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaattta 245  Q
    ||||||||| ||||||  |||||||||||||||||| |||||||||| | |||| ||||||||    
T  42740980 attctacttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaattta 42741042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 31415375 - 31415412
Alignment:
Q  220 agaattgattctaacacacaaatttataattcaactta 257  Q
    |||||||||||| |||||||||||||||||||||||||    
T  31415375 agaattgattcttacacacaaatttataattcaactta 31415412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 30503212 - 30503258
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgatt 229  Q
    ||||||||| |||| || ||| |||||||||||||||||||||||||    
T  30503212 attctacttgaagccaggattcgtagcttttgattcaagaattgatt 30503258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 33019228 - 33019166
Alignment:
Q  193 aagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||| |||||||||||||| ||  |||||||||| | ||||| ||||||||| |||||||    
T  33019228 aagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaact 33019166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 4662985 - 4662913
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| ||||||| |||||||||||||| ||| |||||||||| | |||||||||| |||| |||||||    
T  4662985 attctacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaact 4662913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 13384736 - 13384664
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    |||||| || ||||||  |||||||||||||||||| |||||||||| | ||||||||||||||| |||||||    
T  13384736 attctatttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaact 13384664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 32927895 - 32927967
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| ||||||| |||||||||||||||||  |||||| ||| | ||||||||||||||| |||||||    
T  32927895 attctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaact 32927967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 35494993 - 35495067
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaactta 257  Q
    ||||||| | ||||||| |||||||||||||||||| ||||||| || | |||||||||| |||| |||||||||    
T  35494993 attctacatgaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaactta 35495067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 38868501 - 38868573
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| ||||||  |||||||||||||| ||| | |||||||| | ||||||||||||||| |||||||    
T  38868501 attctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaatttatagttcaact 38868573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 26100227 - 26100156
Alignment:
Q  184 ttctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||| || ||||||| |||||||||||||||||| | |||||||| | ||||||||||||||  |||||||    
T  26100227 ttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaact 26100156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 15677898 - 15677825
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattga-ttctaacacacaaatttataattcaact 255  Q
    ||||||||| ||||||| |||| ||||||||||||  |||||||| || | ||||||||||||||| |||||||    
T  15677898 attctacttgaagctaggatttatagcttttgattatagaattgattttttacacacaaatttatagttcaact 15677825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 37684408 - 37684480
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| ||| ||| |||||| ||||||||||| | |||||||| |||  || |||||||||||||||||    
T  37684408 attctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaatttataattcaact 37684480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 32994324 - 32994260
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 247  Q
    ||||||||| ||||||  |||| |||||||||| || |||||||||| | | |||||||||||||    
T  32994324 attctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttata 32994260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 10669573 - 10669486
Alignment:
Q  155 gagaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaat 242  Q
    |||| |||||||||| |||||||||| || ||||||| ||| || ||||||||| |||| ||||  ||||||||||||||||| ||||    
T  10669573 gagagatcaattttggagactaaaaataaatctacttgaaggtactatttgtagttttttattctggaattgattctaacacaaaaat 10669486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 4910911 - 4910975
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 247  Q
    ||||||||| ||||||  |||||||||||||||||| |||||||||| | ||| |||||||||||    
T  4910911 attctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttata 4910975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 6654173 - 6654102
Alignment:
Q  182 aattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 253  Q
    |||||||||| ||||||| ||||||||||||| |||| ||| |||||| | ||||| ||||||||| |||||    
T  6654173 aattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagttcaa 6654102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 46355 - 46298
Alignment:
Q  200 tatttgtagcttttgattcaagaattgattctaacacacaaa--tttataattcaact 255  Q
    ||||||||||||||||||| ||||| |||||||||| |||||  ||||||||||||||    
T  46355 tatttgtagcttttgattctagaatagattctaacaaacaaatttttataattcaact 46298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 1485228 - 1485156
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    ||||||||| || |||| | ||| |||||||||||| |||||||||| |||||| |||||||||  |||||||    
T  1485228 attctacttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaact 1485156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 7952791 - 7952727
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 247  Q
    ||||||||| |||| || |||||||||||||||||| |||||||  | | |||||||||||||||    
T  7952791 attctacttgaagcgaggatttgtagcttttgattctagaattgggtttcacacacaaatttata 7952727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 17225875 - 17225927
Alignment:
Q  203 ttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    |||||||||||||||| |||||||||| | ||| ||||||||||| |||||||    
T  17225875 ttgtagcttttgattctagaattgatttttacatacaaatttatagttcaact 17225927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 25195853 - 25195925
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    |||||| ||||| |||| |||| ||||||||||||| |||||||| |   ||||||||||||||| |||||||    
T  25195853 attctaattaaaactaggatttatagcttttgattctagaattgaattgtacacacaaatttatagttcaact 25195925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 765468 - 765422
Alignment:
Q  183 attctacttaaagctagtatttgtagcttttgattcaagaattgatt 229  Q
    ||||||||| ||||||  |||||||||||||||||| ||||||||||    
T  765468 attctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 34027475 - 34027427
Alignment:
Q  207 agcttttgattcaagaattgattctaacacacaaatttataattcaact 255  Q
    |||||||||||| |||||||||| | |||| ||||||||| ||||||||    
T  34027475 agcttttgattctagaattgatttttacactcaaatttattattcaact 34027427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University